Name: Agromyces soli MJ21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24183

Type strain:

Species: Agromyces soli

Strain Designation: MJ21

Culture col. no.: DSM 27631, JCM 16247, KCTC 19549, MTCC 11074, NBRC 109063

Strain history: <- MJ Lee, H-Plus Eco, Korea

NCBI tax ID(s): 659012 (species)

SI-ID 406806

DSM 27631

Section

Agromyces soli MJ21 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from farm soil.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Agromyces*
	Species	**Agromyces soli**
	Full Scientific Name (LPSN)	Agromyces soli Lee et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20271]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #20271]

Culture medium growth

[Ref.: #20271]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20271]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20271]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #20271]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #20271]	Murein short key	B07
[Ref.: #20271]	Murein types	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

[Ref.: #67770]

Observation

quinones: MK-12, MK-11

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20271]	Sample type/isolated from	farm soil
[Ref.: #20271]	Geographic location (country and/or sea, region)	near Daejeon
[Ref.: #20271]	Country	Republic of Korea
[Ref.: #20271]	Country ISO 3 Code	KOR
[Ref.: #20271]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Farm soil near Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From farm soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Engineered	#Food production	#Aquaculture

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ241325 (>99% sequence identity) for Agromyces mediolanus from Microbeatlas

Aquatic Samples	780
Soil Samples	3220
Animal Samples	1854
Plant Samples	557
Total Samples	6411

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20271]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20271]	Agromyces soli strain MJ21 16S ribosomal RNA gene, partial sequence	GQ241325	1409	ENA	659012 tax ID

[Ref.: #20271]	GC-content	73.4 mol%
[Ref.: #67770]	GC-content	73.4 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20271]

Culture collection no.

DSM 27631, JCM 16247, KCTC 19549, MTCC 11074, NBRC 109063

[Ref.: #88136]

SI-ID 406806

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces soli sp. nov., isolated from farm soil.	Lee M, Ten LN, Woo SG, Park J	Int J Syst Evol Microbiol	10.1099/ijs.0.021568-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20271

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27631

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88136

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406806.1 )

* These data were automatically processed and therefore are not curated

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