Agromyces soli (DSM 27631, JCM 16247, KCTC 19549)

Name: Agromyces soli (DSM 27631, JCM 16247, KCTC 19549)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24183

Type strain

Strain Designation MJ21

Culture col. no. DSM 27631 JCM 16247 KCTC 19549 MJ21 NBRC 109063 1 more

NCBI tax ID(s) 659012

Special Collections DSMZ JCM KCTC

History DSMZ <- KCTC; KCTC 19549 JCM <-- M. J. Lee MJ21. KCTC <- MJ Lee, H-Plus Eco, Korea

Links

Agromyces soli MJ21 is an aerobe, Gram-positive bacterium that was isolated from farm soil.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406806

KCTC 19549,JCM 16247,NBRC 109063,DSM 27631

@ref 20215

Last LPSN update 2026-05-29 08:30:34

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Agromyces

Species Agromyces soli

Full scientific name Agromyces soli Lee et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	positive
125439	positive	98.246

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20271	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20271	positive	growth	28
67770	positive	growth	28
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	97.527

Murein

@ref	Murein short key	Type
20271	B07	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

Observation

67770

Observationquinones: MK-12, MK-11

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Engineered	#Food production	#Aquaculture

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20271	farm soil	near Daejeon	Republic of Korea	KOR	Asia
67770	Farm soil near Daejeon		Republic of Korea	KOR	Asia
67771	From farm soil		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence GQ241325 (>99% sequence identity) for Agromyces mediolanus from Microbeatlas

Aquatic Samples	780
Soil Samples	3220
Animal Samples	1854
Plant Samples	557
Total Samples	6411

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20271	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953201v1 assembly for Agromyces soli JCM 16247	scaffold	GCA_039532015	659012	43.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20271	Agromyces soli strain MJ21 16S ribosomal RNA gene, partial sequence	GQ241325	1409		659012

GC content

@ref	GC-content (mol%)	Method
20271	73.4
67770	73.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953201v1 assembly for Agromyces soli JCM 16247
NCBI: GCA_039532015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.53	no
125439	gram_stain	BacteriaNetⓘ	positive	98.25	no
125439	motility	BacteriaNetⓘ	no	75.89	no
125439	spore_formation	BacteriaNetⓘ	no	82.34	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces soli sp. nov., isolated from farm soil.	Lee M, Ten LN, Woo SG, Park J	Int J Syst Evol Microbiol	10.1099/ijs.0.021568-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20271	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27631
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Agromyces soli (DSM 27631, JCM 16247, KCTC 19549)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039532015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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