Weissella diestrammenae (DSM 27940, JCM 18559, KACC 16890)

Name: Weissella diestrammenae (DSM 27940, JCM 18559, KACC 16890)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24151

Type strain

Strain Designation ORY33

Culture col. no. DSM 27940 JCM 18559 KACC 16890 ORY33

NCBI tax ID(s) 1162633

Special Collections DSMZ JCM Literature strains

History DSMZ <- JCM; JCM 18559 <- J.-W. Bae; ORY33 JCM <-- J.-W. Bae ORY33.

Links

Weissella diestrammenae ORY33 is a microaerophile, Gram-positive, coccus-shaped bacterium that was isolated from gut of a camel cricket .

Gram-positive coccus-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400829

LMG 30643,JCM 18559,DSM 27940

@ref 20215

Last LPSN update 2026-05-29 08:30:34

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Weissella

Species Weissella diestrammenae

Full scientific name Weissella diestrammenae Oh et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30921	positive	1.1 µm	0.6 µm	coccus-shaped
125439	positive				96.973
125438					93.5
125438	positive				93.819

Pigmentation

30921

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21074	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21074	positive	growth	30
30921	positive	growth	04-37
30921	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
30921	positive	optimum	7
30921	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
21074	microaerophile
30921	facultative anaerobe
125439	facultative anaerobe	98.31

Spore formation

@ref	Spore formation	Confidence
125439		91.631

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30921	NaCl	positive	growth	0-4 %

Observation

30921

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30921	23652 ChEBI	dextrin	+	carbon source
30921	28757 ChEBI	fructose	+	carbon source
30921	24265 ChEBI	gluconate	+	carbon source
30921	17234 ChEBI	glucose	+	carbon source
30921	17596 ChEBI	inosine	+	carbon source
30921	24996 ChEBI	lactate	+	carbon source
30921	17306 ChEBI	maltose	+	carbon source
30921	37684 ChEBI	mannose	+	carbon source
30921	506227 ChEBI	N-acetylglucosamine	+	carbon source
30921	33942 ChEBI	ribose	+	carbon source
30921	16704 ChEBI	uridine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30921	acid phosphatase	+	3.1.3.2
30921	alkaline phosphatase	+	3.1.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	#Stomach

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
21074	gut of a camel cricket (Diestrammena coreana )	Diestrammena coreana	Republic of Korea	KOR	Asia
67770	Gut of a camel cricket (Diestrammena coreana)	Diestrammena coreana	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC521990 (>99% sequence identity) for Weissella diestrammenae subclade from Microbeatlas

Aquatic Samples	26
Soil Samples	13
Animal Samples	458
Plant Samples	56
Total Samples	553

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21074	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Weissella diestrammenae DSM 27940	complete			2901190185	1162633	96.98
66792	ASM1439725v1 assembly for Weissella diestrammenae KACC 16890	complete	GCA_014397255	1162633.3	2896402965	1162633	96.43
66792	Weissella diestrammenae strain DSM 27940	contig		1162633.4		1162633	75.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21074	Weissella diestrammenae strain ORY33 16S ribosomal RNA gene, partial sequence	JQ646523	1451		1162633
67770	Weissella diestrammenae JCM 18559 gene for 16S rRNA, partial sequence	LC521990	1515		1162633

GC content

@ref	GC-content (mol%)	Method
21074	45.1	thermal denaturation, midpoint method (Tm)
30921	45

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1439725v1 assembly for Weissella diestrammenae KACC 16890
BV-BRC: 1162633.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.31	no
125439	gram_stain	BacteriaNetⓘ	positive	96.97	no
125439	motility	BacteriaNetⓘ	no	88.05	no
125439	spore_formation	BacteriaNetⓘ	no	91.63	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Weissella diestrammenae KACC 16890
NCBI: GCA_014397255.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.82	yes
125438	anaerobic	anaerobicⓘ	no	87.14	yes
125438	aerobic	aerobicⓘ	no	95.17	yes
125438	spore-forming	spore-formingⓘ	no	87.69	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	93.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Profiling the gut structure and microbiota, and identifying two dominant bacteria belonging to the Weissella genus in mandarin fish (Siniperca chuatsi) fed an artificial diet.	Wang J, Hao Y, Zhang L, Gao X, Xu Y, Wang J, Hanafiah F, Khor W, Sun Y, Wu C.	Front Microbiol	10.3389/fmicb.2024.1486501	2024
Phylogeny	Weissella diestrammenae sp. nov., isolated from the gut of a camel cricket (Diestrammena coreana).	Oh SJ, Shin NR, Hyun DW, Kim PS, Kim JY, Kim MS, Yun JH, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.047548-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21074	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27940
#27251	IJSEM 2951 2013 ( DOI 10.1099/ijs.0.047548-0 , PubMed 23396715 )
#30921	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27251
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Weissella diestrammenae (DSM 27940, JCM 18559, KACC 16890)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014397255

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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