Name: Bombilactobacillus bombi DSM 26517
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24142

Type strain:

Species: Bombilactobacillus bombi

Culture col. no.: DSM 26517, CCM 8440, KCTC 21042, BTLCH M1/2, BCRC 80961

Strain history: <- DSM <- J Killer, Inst. Animal Physiol. and Genetics, Czech Acad Sci, Prague, BTLCH M1/2

NCBI tax ID(s): 1303590 (species)

SI-ID 394055

DSM 26517, CCM 8440

Special Collections

DSMZ
KCTC

Section

When using BacDive for research please cite our paper

Bombilactobacillus bombi DSM 26517 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from digestive tract of laboratory-reared bumblebee queen .

rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Bombilactobacillus*
	Species	**Bombilactobacillus bombi**
	Full Scientific Name (LPSN)	Bombilactobacillus bombi (Killer et al. 2014) Zheng et al. 2020

Synonym

Lactobacillus bombi

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	curved-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21002]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #21002]

Culture medium growth

[Ref.: #21002]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21002]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21002]			growth	37 °C
[Ref.: #67771]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21002]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #21002]	Murein short key	A11.31
[Ref.: #21002]	Murein types	A4alpha L-Lys-D-Asp

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21002]	Sample type/isolated from	digestive tract of laboratory-reared bumblebee queen (Bombus terrestris)
[Ref.: #21002]	Host species	Bombus terrestris
[Ref.: #21002]	Geographic location (country and/or sea, region)	Troubsko, Brno
[Ref.: #21002]	Country	Czech Republic
[Ref.: #21002]	Country ISO 3 Code	CZE
[Ref.: #21002]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From digestive tract of laboratory-reared bumblebee queen, `Bombus terrestris`, reared in the laboratory at Agricultural Research
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ltd, Brno, Troubsko
[Ref.: #67771]	Country	Czech Republic
[Ref.: #67771]	Country ISO 3 Code	CZE
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	-
#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ078643 (>99% sequence identity) for Bombilactobacillus bombi subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	12
Animal Samples	1419
Plant Samples	12
Total Samples	1466

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21002]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21002]	Lactobacillus bombi strain BTLCH M1/2 16S ribosomal RNA gene, partial sequence	KJ078643	1490	GenBank ENA	1303590 tax ID
[Ref.: #124043]	Lactobacillus sp. BTLCH M1/2 16S ribosomal RNA gene, partial sequence.	KC294224	1433	GenBank ENA	1303590 tax ID	*
[Ref.: #124043]	Lactobacillus bombi strain M250 3MRA 16S ribosomal RNA gene, partial sequence.	KJ078644	1490	GenBank ENA	1303590 tax ID	*
[Ref.: #124043]	Lactobacillus bombi strain M250 3MRA 16S ribosomal RNA gene, partial sequence.	KJ078645	1490	GenBank ENA	1303590 tax ID	*

[Ref.: #21002]	GC-content	37.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	37.8 mol%

Availability in culture collections External links

[Ref.: #21002]

Culture collection no.

DSM 26517, CCM 8440, KCTC 21042, BTLCH M1/2, BCRC 80961

[Ref.: #88100]

SI-ID 394055

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus bombi sp. nov., from the digestive tract of laboratory-reared bumblebee queens (Bombus terrestris).	Killer J, Votavova A, Valterova I, Vlkova E, Rada V, Hroncova Z	Int J Syst Evol Microbiol	10.1099/ijs.0.063602-0	2014	*
Phylogeny	Bombilactobacillus apium sp. nov., isolated from the gut of honeybee (Apis cerana).	Kang JP, Huo Y, Hoang VA, Yang DU, Yang DC, Kang SC	Arch Microbiol	10.1007/s00203-021-02249-y	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21002

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26517

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88100

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394055.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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