Companilactobacillus heilongjiangensis (DSM 28069, LMG 26166, NCIMB 14701)

Name: Companilactobacillus heilongjiangensis (DSM 28069, LMG 26166, NCIMB 14701)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24136

Type strain

Strain Designation S4-3

Culture col. no. DSM 28069 LMG 26166 NCIMB 14701 S4-3 KCTC 21032 1 more

NCBI tax ID(s) 1074467

Special Collections DSMZ JCM KCTC Literature strains

History <- LMG; LMG 26166 <- C. T. Gu, Northeast Agricultural Univ., Harbin, China; S4-3 LMG 26166 <-- C. T. Gu; Northeast Agric. Univ., China; S4-3.

Links

Companilactobacillus heilongjiangensis S4-3 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from Chinese traditional pickle.

Gram-positive rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 374057

LMG 26166,NCIMB 14701,KCTC 21032,JCM 30916,DSM 28069

@ref 20215

Last LPSN update 2026-02-09 11:23:53

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Companilactobacillus

Species Companilactobacillus heilongjiangensis

Full scientific name Companilactobacillus heilongjiangensis (Gu et al. 2013) Zheng et al. 2020

Synonyms (1)

Lactobacillus heilongjiangensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31143	positive	rod-shaped
125438			92.5
125438	positive		92.111

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20996	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20996	positive	growth	30	mesophilic
31143	positive	optimum	30	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH
31143	positive	optimum	6.3

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
20996	microaerophile
31143	aerobe
125439	obligate aerobe	98.2

Spore formation

31143

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
31143	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
31143	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31143	28260 ChEBI	galactose	+	carbon source
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31143	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31143	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
31143	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
31143	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31143	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
31143	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
31143	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
31143	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
20996	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	+	+	+	+	+	+	+	+	+	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20996	Chinese traditional pickle	Heilongjiang Province	China	CHN	Asia
67770	Chinese pickle	Heilongjiang Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JF411966 (>99% sequence identity) for Companilactobacillus from Microbeatlas

Aquatic Samples	523
Soil Samples	475
Animal Samples	3246
Plant Samples	405
Total Samples	4649

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20996	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM83164v3 assembly for Companilactobacillus heilongjiangensis DSM 28069	complete	GCA_000831645	1074467.10	2808606691	1074467	98.25
67770	ASM540532v1 assembly for Companilactobacillus heilongjiangensis S4-3	contig	GCA_005405325	1074467.8	8067801095	1074467	73.6
66792	Lactobacillus heilongjiangensis DSM 28069	contig		1074467.3		1074467	64.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20996	Lactobacillus heilongjiangensis strain S4-3 16S ribosomal RNA gene, partial sequence	JF411966	1448		1074467

GC content

@ref	GC-content (mol%)	Method
20996	38.9	thermal denaturation, midpoint method (Tm)
31143	38.9
67770	37.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Companilactobacillus heilongjiangensis DSM 28069
NCBI: GCA_000831645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no
125439	gram_stain	BacteriaNetⓘ	positive	89.90	no
125439	motility	BacteriaNetⓘ	no	68.20	no
125439	spore_formation	BacteriaNetⓘ	no	69.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Companilactobacillus heilongjiangensis DSM 28069
NCBI: GCA_000831645.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.11	no
125438	anaerobic	anaerobicⓘ	no	84.08	yes
125438	aerobic	aerobicⓘ	no	95.32	no
125438	spore-forming	spore-formingⓘ	no	86.55	yes
125438	thermophilic	thermophileⓘ	no	94.96	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Lactobacillus heilongjiangensis DSM 28069(T): Insight into its probiotic potential.	Zheng B, Jiang X, Cheng H, Xu Z, Li A, Hu X, Xiao Y	J Biotechnol	10.1016/j.jbiotec.2015.09.023	2015
Phylogeny	Lactobacillus zhachilii sp. nov., a lactic acid bacterium isolated from Zha-Chili.	Zhang Z, Hou Q, Wang Y, Li W, Zhao H, Sun Z, Guo Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.003362	2019
Phylogeny	Lactobacillus heilongjiangensis sp. nov., isolated from Chinese pickle.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.053355-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20996	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28069
#27471	IJSEM 4094 2013 ( DOI 10.1099/ijs.0.053355-0 , PubMed 23728376 )
#31143	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27471
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Companilactobacillus heilongjiangensis (DSM 28069, LMG 26166, NCIMB 14701)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000831645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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