Name: Lactobacillus delbrueckii subsp. jakobsenii CHCC13979
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24135

Type strain:

Species: Lactobacillus delbrueckii subsp. jakobsenii

Strain Designation: CHCC13979, ZN7a-9

Culture col. no.: DSM 26046, LMG 27067, JCM 30917, KCTC 21031

Strain history: LMG 27067 <-- D. B. Adimpong; Dept. of Food Sci., Univ. Copenhagen, Denmark; ZN7a-9 <-- H. Sawadogo-Lingani; IRSAT/CNRST, Dept. Tech. Alimentaire, Ouagadougou, Burkina Faso.

NCBI tax ID(s): 1217420 (strain), 1537158 (subspecies)

SI-ID 380562

LMG 27067, DSM 26046, KCTC 21031, JCM 30917

Section

Lactobacillus delbrueckii subsp. jakobsenii CHCC13979 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from malted sorghum wort used for making the African fermented beverage dolo wort.

Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus delbrueckii subsp. jakobsenii**
	Full Scientific Name (LPSN)	Lactobacillus delbrueckii subsp. jakobsenii Adimpong et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30974]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30974]	Cell length	6.25 µm

[Ref.: #30974]	Cell width	0.5 µm

[Ref.: #30974]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	no Confidence in %96.69

[Ref.: #30974]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20995]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #20995]

Culture medium growth

[Ref.: #20995]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20995]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20995]	growth	37 °C
[Ref.: #30974]	optimum	40 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #20995]	Temperature range	mesophilic
[Ref.: #30974]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30974]			optimum	4

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20995]	Oxygen tolerance	microaerophile
[Ref.: #30974]	Oxygen tolerance	anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30974]		NaCl		optimum	4	%

[Ref.: #20995]	Murein short key	A11.31
[Ref.: #20995]	Murein types	A4alpha L-Lys-D-Asp

[Ref.: #30974]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30974]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30974]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30974]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #30974]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30974]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30974]	salicin ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30974]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #30974]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #20995]	14792	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #20995]	14791	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20995]	Sample type/isolated from	malted sorghum wort used for making the African fermented beverage dolo wort
[Ref.: #20995]	Geographic location (country and/or sea, region)	Quagadougou
[Ref.: #20995]	Country	Burkina Faso
[Ref.: #20995]	Country ISO 3 Code	BFA
[Ref.: #20995]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Malted sorghum wort
[Ref.: #67770]	Country	Burkina Faso
[Ref.: #67770]	Country ISO 3 Code	BFA
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Engineered	-	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ801728 (>99% sequence identity) for Lactobacillus delbrueckii from Microbeatlas

Aquatic Samples	6667
Soil Samples	2030
Animal Samples	50988
Plant Samples	973
Total Samples	60658

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20995]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20995]	Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 16S ribosomal RNA gene, partial sequence	JQ801728.1	1382	ENA	1217420 tax ID
[Ref.: #67770]	Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 16S ribosomal RNA gene, partial sequence	JQ801728	1382	ENA	1217420 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046	GCA_000387565	contig	GenBank	1217420 tax ID
[Ref.: #67770]	Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046	GCA_001437485	scaffold	GenBank	1217420 tax ID
[Ref.: #67770]	Lactobacillus delbrueckii subsp. jakobsenii DSM 26046	GCA_004354615	scaffold	GenBank	1537158 tax ID
[Ref.: #66792]	Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046	1217420.6	complete	PATRIC	1217420 tax ID	*
[Ref.: #66792]	Lactobacillus delbrueckii subsp. jakobsenii strain DSM 26046	1537158.4	wgs	PATRIC	1537158 tax ID	*
[Ref.: #66792]	Lactobacillus delbrueckii ZN7a-9	2541047507	draft	JGI IMG/M	1217420 tax ID	*

[Ref.: #20995]	GC-content	50.2 mol%	sequence analysis
[Ref.: #30974]	GC-content	50.2 mol%
[Ref.: #67770]	GC-content	50.2 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	50.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 DSM 26046 NCBI: GCA_001888925.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 DSM 26046 NCBI: GCA_001888925.1
[Ref.: #69480]	flagellated	no	97.724	no
[Ref.: #69480]	gram-positive	yes	94.511	yes
[Ref.: #69480]	anaerobic	yes	50.765	no
[Ref.: #69480]	aerobic	no	98.37	no
[Ref.: #69480]	halophile	yes	82.638	no
[Ref.: #69480]	spore-forming	no	96.452	no
[Ref.: #69480]	glucose-util	yes	91.033	yes
[Ref.: #69480]	thermophile	no	98.366	no
[Ref.: #69480]	motile	no	94.875	no
[Ref.: #69480]	glucose-ferment	yes	87.771	no

Availability in culture collections External links

[Ref.: #20995]

Culture collection no.

DSM 26046, LMG 27067, JCM 30917, KCTC 21031

[Ref.: #88093]

SI-ID 380562

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus delbrueckii subsp. jakobsenii subsp. nov., isolated from dolo wort, an alcoholic fermented beverage in Burkina Faso.	Adimpong DB, Nielsen DS, Sorensen KI, Vogensen FK, Sawadogo-Lingani H, Derkx PMF, Jespersen L	Int J Syst Evol Microbiol	10.1099/ijs.0.048769-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20995

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26046

#30974

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27304 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88093

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380562.1 )

#27304

IJSEM 3720 2013 ( DOI 10.1099/ijs.0.048769-0 , PubMed 23645015 )

* These data were automatically processed and therefore are not curated

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Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 DSM 26046

Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 DSM 26046

Change proposal

Change proposal