Lactobacillus delbrueckii subsp. jakobsenii (DSM 26046, CHCC13979, LMG 27067)

Name: Lactobacillus delbrueckii subsp. jakobsenii (DSM 26046, CHCC13979, LMG 27067)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24135

Type strain

Strain Designation CHCC13979, ZN7a-9

Culture col. no. DSM 26046 CHCC13979 LMG 27067 ZN7a-9 KCTC 21031 1 more

NCBI tax ID(s) 1217420 1537158

Special Collections DSMZ JCM KCTC Literature strains

History <- D. B. Adimpong, Dept. of Food Science, Univ. Copenhagen, Frederiksberg, Denmark; ZN7a-9 <- H. Sawadogo-Lingani, IRSAT/CNRST, Dept. Tech. Alimentaire, Qougadougou, Burkina Faso LMG 27067 <-- D. B. Adimpong; Dept. of Food Sci., Univ. Copenhagen, Denmark; ZN7a-9 <-- H. Sawadogo-Lingani; IRSAT/CNRST, Dept. Tech. Alimentaire, Ouagadougou, Burkina Faso.

Links

Lactobacillus delbrueckii subsp. jakobsenii CHCC13979 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from malted sorghum wort used for making the African fermented beverage dolo wort.

Gram-positive rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 380562

LMG 27067,DSM 26046,KCTC 21031,JCM 30917

@ref 20215

Last LPSN update 2025-12-16 09:52:47

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactobacillus

Species Lactobacillus delbrueckii subsp. jakobsenii

Full scientific name Lactobacillus delbrueckii subsp. jakobsenii Adimpong et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30974	positive	6.25 µm	0.5 µm	rod-shaped
125438					95.5
125438	positive				94.266

Pigmentation

30974

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20995	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20995	positive	growth	37	mesophilic
30974	positive	optimum	40	thermophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30974	positive	optimum	4	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
20995	microaerophile
30974	anaerobe
125439	anaerobe	99.7

Spore formation

@ref	Spore formation	Confidence
125439		91.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30974	NaCl	positive	optimum	4 %

Murein

@ref	Murein short key	Type
20995	A11.31	A4alpha L-Lys-D-Asp

Observation

30974

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
30974	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
30974	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
30974	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
30974	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
30974	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
30974	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
30974	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
30974	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
20995	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
20995	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	-	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20995	malted sorghum wort used for making the African fermented beverage dolo wort	Quagadougou	Burkina Faso	BFA	Africa
67770	Malted sorghum wort		Burkina Faso	BFA	Africa

Taxonmaps

69479

Global distribution of 16S sequence JQ801728 (>99% sequence identity) for Lactobacillus delbrueckii from Microbeatlas

Aquatic Samples	6667
Soil Samples	2030
Animal Samples	50988
Plant Samples	973
Total Samples	60658

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20995	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM188892v1 assembly for Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046	complete	GCA_001888925	1217420.18	2718217815	1217420	97.49
66792	Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046	complete		1217420.6		1217420	81.4
67770	ASM38756v1 assembly for Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046	contig	GCA_000387565	1217420.3	2541047507	1217420	64.27
67770	ASM435461v1 assembly for Lactobacillus delbrueckii subsp. jakobsenii DSM 26046	scaffold	GCA_004354615	1537158.4	2916473422	1537158	63.83
67770	ASM143748v1 assembly for Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046	scaffold	GCA_001437485	1217420.5	2657245472	1217420	52.42

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20995	Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 16S ribosomal RNA gene, partial sequence	JQ801728.1	1382	1217420
67770	Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 16S ribosomal RNA gene, partial sequence	JQ801728	1382	1217420
124043	Lactobacillus delbrueckii subsp. jakobsenii JCM30917 gene for 16S rRNA, partial sequence.	LC685621	1435	1537158

GC content

@ref	GC-content (mol%)	Method
20995	50.2	sequence analysis
30974	50.2
67770	50.2	genome sequence analysis
67770	50.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046
NCBI: GCA_001888925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.70	no
125439	gram_stain	BacteriaNetⓘ	positive	60.40	no
125439	motility	BacteriaNetⓘ	no	65.70	no
125439	spore_formation	BacteriaNetⓘ	no	91.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 DSM 26046
NCBI: GCA_001888925.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.27	yes
125438	anaerobic	anaerobicⓘ	no	79.30	no
125438	aerobic	aerobicⓘ	no	97.74	no
125438	spore-forming	spore-formingⓘ	no	88.33	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	95.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Lactobacillus delbrueckii subsp. allosunkii and lactis as emerging human uropathogens in elderly patients.	Guerin F, Sassi M, Gravey F, Zouari A, Quenet B, Lecourt M, Ract P, Michaux C, Auzou M, Isnard C, Cattoir V.	J Clin Microbiol	10.1128/jcm.02072-24	2025
	Genomic Characterization of Wild Lactobacillus delbrueckii Strains Reveals Low Diversity but Strong Typicity.	Grizon A, Theil S, Helinck S, Gerber P, Bonnarme P, Chassard C.	Microorganisms	10.3390/microorganisms12030512	2024
Genetics	Genome mining approach reveals the CRISPR-Cas systems features and characteristics in Lactobacillus delbrueckii strains.	Panahi B, Rostampour M, Ghaffari MR, Nami Y.	Heliyon	10.1016/j.heliyon.2024.e39920	2024
Phylogeny	Identification and Monitoring of Lactobacillus delbrueckii Subspecies Using Pangenomic-Based Novel Genetic Markers.	Kim E, Cho EJ, Yang SM, Kim HY.	J Microbiol Biotechnol	10.4014/jmb.2009.09034	2021
Genetics	Genomic and Phenotypic Characterization of Mastitis-Causing Staphylococci and Probiotic Lactic Acid Bacteria Isolated from Raw Sheep's Milk.	Apostolakos I, Skarlatoudi T, Vatavali K, Giannouli A, Bosnea L, Mataragas M.	Int J Mol Sci	10.3390/ijms241813883	2023
Genetics	Draft genome sequence of Lactobacillus delbrueckii subsp. bulgaricus LBP UFSC 2230: a tool for preliminary identification of enzymes involved in CLA metabolism.	Kuhl GC, Mazzon RR, Duarte RTD, De Dea Lindner J.	Braz J Microbiol	10.1007/s42770-021-00479-2	2021
Genetics	Antimicrobial Susceptibility of Lactobacillus delbrueckii subsp. lactis from Milk Products and Other Habitats.	Shani N, Oberhaensli S, Berthoud H, Schmidt RS, Bachmann HP.	Foods	10.3390/foods10123145	2021
	Probiogenomics of Lactobacillus delbrueckii subsp. lactis CIDCA 133: In Silico, In Vitro, and In Vivo Approaches.	de Jesus LCL, Drumond MM, Aburjaile FF, Sousa TJ, Coelho-Rocha ND, Profeta R, Brenig B, Mancha-Agresti P, Azevedo V.	Microorganisms	10.3390/microorganisms9040829	2021
Genetics	Differentiation of Lacticaseibacillus zeae Using Pan-Genome Analysis and Real-Time PCR Method Targeting a Unique Gene.	Kim E, Yang SM, Kim HY.	Foods	10.3390/foods10092112	2021
Phylogeny	Classification of Latilactobacillus sakei subspecies based on MALDI-TOF MS protein profiles using machine learning models.	Kim E, Yang S-M, Lee S-Y, Jung D-H, Kim H-Y.	Microbiol Spectr	10.1128/spectrum.03668-23	2024
Phylogeny	Lactobacillus delbrueckii subsp. jakobsenii subsp. nov., isolated from dolo wort, an alcoholic fermented beverage in Burkina Faso.	Adimpong DB, Nielsen DS, Sorensen KI, Vogensen FK, Sawadogo-Lingani H, Derkx PMF, Jespersen L	Int J Syst Evol Microbiol	10.1099/ijs.0.048769-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20995	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26046
#27304	IJSEM 3720 2013 ( DOI 10.1099/ijs.0.048769-0 , PubMed 23645015 )
#30974	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27304
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Lactobacillus delbrueckii subsp. jakobsenii (DSM 26046, CHCC13979, LMG 27067)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Observation

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001888925

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media