Name: Oribacterium asaccharolyticum ACB7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24116

Type strain:

Species: Oribacterium asaccharolyticum

Strain Designation: ACB7, HM-482

Culture col. no.: DSM 24638, ATCC BAA-2639, KCTC 15511

Strain history: <- DSM <- M. Sizova, Northeastern Univ., Boston, USA

NCBI tax ID(s): 1501332 (species)

SI-ID 399846

DSM 24638

Section

Oribacterium asaccharolyticum ACB7 is an anaerobe, mesophilic, motile bacterium that was isolated from subgingival plaque, healthy 25-year-old African American female.

motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Oribacterium*
	Species	**Oribacterium asaccharolyticum**
	Full Scientific Name (LPSN)	Oribacterium asaccharolyticum Sizova et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	variable

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20700]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #20700]

Culture medium growth

[Ref.: #20700]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20700]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20700]			growth	37 °C
[Ref.: #67771]			growth	37 °C

[Ref.: #20700]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20700]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #67771]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #20700]	12783	-	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	+/-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20700]	Sample type/isolated from	subgingival plaque, healthy 25-year-old African American female
[Ref.: #20700]	Geographic location (country and/or sea, region)	MA, Boston
[Ref.: #20700]	Country	USA
[Ref.: #20700]	Country ISO 3 Code	USA
[Ref.: #20700]	Continent	North America

[Ref.: #67771]	Sample type/isolated from	From subgingival plaque, healthy 25-year-old African American female
[Ref.: #67771]	Geographic location (country and/or sea, region)	Boston
[Ref.: #67771]	Country	USA
[Ref.: #67771]	Country ISO 3 Code	USA
[Ref.: #67771]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Subgingival plaque
#Host	#Human	#Female

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM120211 (>99% sequence identity) for Oribacterium from Microbeatlas

Aquatic Samples	56
Soil Samples	59
Animal Samples	8384
Plant Samples	84
Total Samples	8583

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20700]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20700]	Oribacterium asaccharolyticum ACB7 16S ribosomal RNA gene, partial sequence	HM120211	1436	ENA	796944 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oribacterium asaccharolyticum ACB7	GCA_000238075	scaffold	GenBank	796944 tax ID	*
[Ref.: #66792]	Oribacterium asaccharolyticum ACB7	2513237306	draft	JGI IMG/M	796944 tax ID	*

[Ref.: #20700]	GC-content	43.3 mol%	sequence analysis
[Ref.: #67771]	GC-content	43.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oribacterium asaccharolyticum ACB7 ACB7 NCBI: GCA_000238075.1
[Ref.: #69480]	motile	yes	79.736	yes
[Ref.: #69480]	flagellated	no	75.343	no
[Ref.: #69480]	gram-positive	yes	64.456	yes
[Ref.: #69480]	anaerobic	yes	99.05	yes
[Ref.: #69480]	aerobic	no	98.769	yes
[Ref.: #69480]	halophile	no	70.65	no
[Ref.: #69480]	spore-forming	no	85.187	yes
[Ref.: #69480]	thermophile	no	98.218	yes
[Ref.: #69480]	glucose-util	yes	83.935	no
[Ref.: #69480]	glucose-ferment	yes	75.068	no

Availability in culture collections External links

[Ref.: #20700]

Culture collection no.

DSM 24638, ATCC BAA-2639, KCTC 15511

[Ref.: #88076]

SI-ID 399846

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oribacterium parvum sp. nov. and Oribacterium asaccharolyticum sp. nov., obligately anaerobic bacteria from the human oral cavity, and emended description of the genus Oribacterium.	Sizova MV, Muller PA, Stancyk D, Panikov NS, Mandalakis M, Hazen A, Hohmann T, Doerfert SN, Fowle W, Earl AM, Nelson KE, Epstein SS	Int J Syst Evol Microbiol	10.1099/ijs.0.060988-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20700

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24638

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88076

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399846.1 )

* These data were automatically processed and therefore are not curated

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Oribacterium asaccharolyticum ACB7 ACB7

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