Name: Sulfurimonas gotlandica GD1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24101

Type strain:

Species: Sulfurimonas gotlandica

Strain Designation: GD1

Culture col. no.: DSM 19862, JCM 16533

Strain history: M. Labrenz GD1.

NCBI tax ID(s): 1176482 (species)

SI-ID 403227

DSM 19862

Section

Sulfurimonas gotlandica GD1 is an anaerobe, psychrophilic, Gram-negative bacterium that was isolated from pelagic zone, oxic-anoxic interface, 215 m depth.

Gram-negative
motile
spiral-shaped
anaerobe
psychrophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Sulfurimonas*
	Species	**Sulfurimonas gotlandica**
	Full Scientific Name (LPSN)	Sulfurimonas gotlandica Labrenz et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30979]	Gram stain	negative

[Ref.: #30979]	Cell length	2.1 µm

[Ref.: #30979]	Cell width	0.66 µm

[Ref.: #30979]	Cell shape	spiral-shaped

[Ref.: #30979]	Motility	yes

[Ref.: #20846]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20846]

Culture medium

SULFURIMONAS GOTLANDICA MEDIUM (DSMZ Medium 1513)

[Ref.: #20846]

Culture medium growth

[Ref.: #20846]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20846]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20846]	growth	15 °C
[Ref.: #30979]	growth	04-20 °C
[Ref.: #30979]	optimum	15 °C
[Ref.: #67770]	growth	15 °C

[Ref.: #20846]	Temperature range	psychrophilic
[Ref.: #30979]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #30979]			optimum	7.35
[Ref.: #30979]			growth	6.7-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20846]	Oxygen tolerance	anaerobe
[Ref.: #30979]	Oxygen tolerance	facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30979]		NaCl		optimum	1.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30979]	acetate ChEBI	+	carbon source
[Ref.: #30979]	formate ChEBI	+	carbon source
[Ref.: #30979]	pyruvate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20846]	Sample type/isolated from	pelagic zone, oxic-anoxic interface, 215 m depth
[Ref.: #20846]	Geographic location (country and/or sea, region)	Gotland Deep in the central Baltic Sea
[Ref.: #20846]	Country	Latvia
[Ref.: #20846]	Country ISO 3 Code	LVA
[Ref.: #20846]	Continent	Europe
[Ref.: #20846]	Geographic location	57.3200°/20.0500°

[Ref.: #67770]	Sample type/isolated from	Sulfidic water of a pelagic redox zone of the central Baltic Sea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20846]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sulfurimonas gotlandica GD1	GCA_000242915	complete	GenBank	929558 tax ID
[Ref.: #66792]	Sulfurimonas gotlandica GD1	929558.9	wgs	PATRIC	929558 tax ID	*
[Ref.: #66792]	Sulfurimonas gotlandica GD1	929558.5	wgs	PATRIC	929558 tax ID	*
[Ref.: #66792]	Sulfurimonas gotlandica GD1	2811995045	complete	JGI IMG/M	929558 tax ID	*

[Ref.: #20846]	GC-content	33.6 mol%	sequence analysis
[Ref.: #30979]	GC-content	33.6 mol%
[Ref.: #67770]	GC-content	33.6 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #20846]

Culture collection no.

DSM 19862, JCM 16533

[Ref.: #88063]

SI-ID 403227

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurimonas gotlandica sp. nov., a chemoautotrophic and psychrotolerant epsilonproteobacterium isolated from a pelagic redoxcline, and an emended description of the genus Sulfurimonas.	Labrenz M, Grote J, Mammitzsch K, Boschker HTS, Laue M, Jost G, Glaubitz S, Jurgens K	Int J Syst Evol Microbiol	10.1099/ijs.0.048827-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20846

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19862

#30979

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27309 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#88063

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403227.1 )

#27309

IJSEM 4141 2013 ( DOI 10.1099/ijs.0.048827-0 , PubMed 23749282 )

* These data were automatically processed and therefore are not curated

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