Name: Halomonas nanhaiensis DSM 25561
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24094

Type strain:

Species: Halomonas nanhaiensis

Culture col. no.: DSM 25561, CCTCC AB 2012911, JCM 18142, YIM 13059, YIM M 13059

Strain history: S.-K. Tang YIM M13059.

NCBI tax ID(s): 1258546 (species)

SI-ID 402803

DSM 25561

Section

Halomonas nanhaiensis DSM 25561 is a mesophilic, motile bacterium that was isolated from marine sediment.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas nanhaiensis**
	Full Scientific Name (LPSN)	Halomonas nanhaiensis Long et al. 2013

Synonym

"Vreelandella nanhaiensis"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.918

[Ref.: #69480]	Motility	yes Confidence in %97.122

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Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #20974]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20974]	growth	28 °C
[Ref.: #20974]	growth	5-28 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #20974]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.815

[Ref.: #67770]

Observation

quinones: Q-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20974]	Sample type/isolated from	marine sediment
[Ref.: #20974]	Geographic location (country and/or sea, region)	South China Sea (116° 8.923' E 21° 5.905' N) at a depth of 310 m
[Ref.: #20974]	Country	China
[Ref.: #20974]	Country ISO 3 Code	CHN
[Ref.: #20974]	Continent	Asia
[Ref.: #20974]	Geographic location	21.0984°/116.1490°

[Ref.: #67770]	Sample type/isolated from	Sediment sample collected from the South China Sea (21° 5.905' N 116° 8.923' E)
[Ref.: #67770]	Geographic location	21.0984°/116.1490°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20974]	Halomonas nanhaiensis strain YIM M 13059 16S ribosomal RNA gene, partial sequence	JX870002	1537	ENA	1258546 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas nanhaiensis JCM 18142	GCA_003990185	scaffold	GenBank	1258546 tax ID	*
[Ref.: #66792]	Halomonas sp. JCM 18142	2498860.3	wgs	PATRIC	1258546 tax ID	*
[Ref.: #66792]	Halomonas sp. JCM 18142	2885257956	draft	JGI IMG/M	2498860 tax ID	*

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GC-content

54.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas nanhaiensis JCM 18142 NCBI: GCA_003990185.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas nanhaiensis JCM 18142 NCBI: GCA_003990185.1
[Ref.: #69480]	motile	yes	88.643	no
[Ref.: #69480]	flagellated	yes	53.884	no
[Ref.: #69480]	gram-positive	no	98.82	no
[Ref.: #69480]	anaerobic	no	97.505	no
[Ref.: #69480]	aerobic	yes	90.889	no
[Ref.: #69480]	halophile	yes	90.131	no
[Ref.: #69480]	spore-forming	no	95.04	no
[Ref.: #69480]	thermophile	no	99.257	yes
[Ref.: #69480]	glucose-util	yes	89.006	no
[Ref.: #69480]	glucose-ferment	no	69.906	no

Availability in culture collections External links

[Ref.: #20974]

Culture collection no.

DSM 25561, CCTCC AB 2012911, JCM 18142, YIM 13059, YIM M 13059

[Ref.: #88058]

SI-ID 402803

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas songnenensis sp. nov., a moderately halophilic bacterium isolated from saline and alkaline soils.	Jiang J, Pan Y, Hu S, Zhang X, Hu B, Huang H, Hong S, Meng J, Li C, Wang K	Int J Syst Evol Microbiol	10.1099/ijs.0.056499-0	2014	*
Phylogeny	Halomonas nanhaiensis sp. nov., a halophilic bacterium isolated from a sediment sample from the South China Sea.	Long MR, Zhang DF, Yang XY, Zhang XM, Zhang YG, Zhang YM, Zhu H, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-013-9879-3	2013	*
Phylogeny	Halomonas populi sp. nov. isolated from Populus euphratica.	Xu L, Ying JJ, Fang YC, Zhang R, Hua J, Wu M, Han BN, Sun C	Arch Microbiol	10.1007/s00203-021-02704-w	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20974

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25561

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88058

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402803.1 )

* These data were automatically processed and therefore are not curated

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Halomonas nanhaiensis JCM 18142

Halomonas nanhaiensis JCM 18142

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