Halolamina salifodinae (DSM 26232, CGMCC 1.12371, JCM 18548)

Name: Halolamina salifodinae (DSM 26232, CGMCC 1.12371, JCM 18548)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24089

Type strain

Strain Designation WSY15-H1

Culture col. no. DSM 26232 CGMCC 1.12371 JCM 18548 WSY15-H1

NCBI tax ID(s) 1202767

Special Collections DSMZ JCM Literature strains

History <- Z. Weiyan, Zhejiang Univ., Hangzhou, China; WSY15-H1 W. Zhang WSY15-H1.

Links

Halolamina salifodinae WSY15-H1 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from salt mine.

Gram-negative aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403096

JCM 18548,DSM 26232

@ref 20215

Last LPSN update 2026-02-09 11:23:53

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Halolamina

Species Halolamina salifodinae

Full scientific name Halolamina salifodinae Zhang et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Motility
31055	negative

Pigmentation

31055

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21220	HALOLAMINA MEDIUM (NOM-3) (DSMZ Medium 1528)		Medium recipe at MediaDive	Name: HALOLAMINA MEDIUM (NOM-3) (DSMZ Medium 1528) Composition: NaCl 184.0 g/l MgSO4 x 7 H2O 26.8 g/l MgCl2 x 6 H2O 23.0 g/l Agar 20.0 g/l KCl 5.4 g/l Yeast extract 1.0 g/l Bacto peptone 0.5 g/l K2HPO4 0.3 g/l NH4Cl 0.25 g/l CaCl2 x 2 H2O 0.25 g/l Sodium formate 0.25 g/l Sodium lactate 0.25 g/l Sodium acetate 0.25 g/l Sodium pyruvate 0.25 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21220	positive	growth	37	mesophilic
31055	positive	growth	20-45
31055	positive	optimum	39.5	mesophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31055	positive	optimum	7.25
31055	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31055	aerobe
125439	obligate anaerobe	95.6

Spore formation

@ref	Spore formation	Confidence
125439		97.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31055	NaCl	positive	growth	9.28-31.32 %
31055	NaCl	positive	optimum	21.17 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31055	30089 ChEBI	acetate	+	carbon source
31055	16449 ChEBI	alanine	+	carbon source
31055	29016 ChEBI	arginine	+	carbon source
31055	4853 ChEBI	esculin	+	hydrolysis
31055	17234 ChEBI	glucose	+	carbon source
31055	29987 ChEBI	glutamate	+	carbon source
31055	24996 ChEBI	lactate	+	carbon source
31055	25115 ChEBI	malate	+	carbon source
31055	18257 ChEBI	ornithine	+	carbon source
31055	15361 ChEBI	pyruvate	+	carbon source
31055	33942 ChEBI	ribose	+	carbon source
31055	17992 ChEBI	sucrose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31055	acid phosphatase	+	3.1.3.2
31055	catalase	+	1.11.1.6
31055	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21220	salt mine	Xinjiang province, Wensu county	China	CHN	Asia
67770	Salt mine in Wensu county	Xinjiang	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21220	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1787423v1 assembly for Halolamina salifodinae DSM 26232	contig	GCA_017874235	1202767.3	2913474752	1202767	73.68
124043	ASM4267796v1 assembly for Halolamina salifodinae CGMCC 1.12371	scaffold	GCA_042677965			1202767	58.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21220	Halolamina salifodinae strain WSY15-H1 16S ribosomal RNA gene, partial sequence	JX014295	1473		1202767
124043	Halolamina salifodinae gene for 16S ribosomal RNA, partial sequence, strain: JCM 18548.	AB935417	1473		1202767

GC content

@ref	GC-content (mol%)	Method
21220	65.4	high performance liquid chromatography (HPLC)
31055	65.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halolamina salifodinae DSM 26232
NCBI: GCA_017874235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.80	no
125439	motility	BacteriaNetⓘ	yes	53.00	no
125439	gram_stain	BacteriaNetⓘ	negative	89.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	95.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt.	Cha IT, Yim KJ, Song HS, Lee HW, Hyun DW, Kim KN, Choi JS, Kim D, Lee SJ, Seo MJ, Choi HJ, Bae JW, Rhee SK, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0145-0	2014
Phylogeny	Halolamina salifodinae sp. nov. and Halolamina salina sp. nov., two extremely halophilic archaea isolated from a salt mine.	Zhang WY, Huo YY, Zhang XQ, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.050864-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21220	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26232
#27385	IJSEM 4380 2013 ( DOI 10.1099/ijs.0.050864-0 , PubMed 23832972 )
#31055	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27385
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halolamina salifodinae (DSM 26232, CGMCC 1.12371, JCM 18548)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017874235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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