Name: Halolamina salifodinae WSY15-H1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24089

Type strain:

Species: Halolamina salifodinae

Strain Designation: WSY15-H1

Culture col. no.: DSM 26232, CGMCC 1.12371, JCM 18548

Strain history: W. Zhang WSY15-H1.

NCBI tax ID(s): 1202767 (species)

SI-ID 403096

DSM 26232

Section

Halolamina salifodinae WSY15-H1 is an aerobe, mesophilic, Gram-negative archaeon that was isolated from salt mine.

Gram-negative
aerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halolamina*
	Species	**Halolamina salifodinae**
	Full Scientific Name (LPSN)	Halolamina salifodinae Zhang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31055]	Gram stain	negative

[Ref.: #31055]	Motility	no

[Ref.: #31055]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21220]

Culture medium

HALOLAMINA MEDIUM (NOM-3) (DSMZ Medium 1528)

[Ref.: #21220]

Culture medium growth

[Ref.: #21220]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21220]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21220]	growth	37 °C
[Ref.: #31055]	growth	20-45 °C
[Ref.: #31055]	optimum	39.5 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #21220]	Temperature range	mesophilic
[Ref.: #31055]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31055]			optimum	7.25
[Ref.: #31055]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31055]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31055]		NaCl		growth	9.28-31.32	%
[Ref.: #31055]		NaCl		optimum	21.17	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31055]	acetate ChEBI	+	carbon source
[Ref.: #31055]	alanine ChEBI	+	carbon source
[Ref.: #31055]	arginine ChEBI	+	carbon source
[Ref.: #31055]	esculin ChEBI	+	hydrolysis
[Ref.: #31055]	glucose ChEBI	+	carbon source
[Ref.: #31055]	glutamate ChEBI	+	carbon source
[Ref.: #31055]	lactate ChEBI	+	carbon source
[Ref.: #31055]	malate ChEBI	+	carbon source
[Ref.: #31055]	ornithine ChEBI	+	carbon source
[Ref.: #31055]	pyruvate ChEBI	+	carbon source
[Ref.: #31055]	ribose ChEBI	+	carbon source
[Ref.: #31055]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31055]	acid phosphatase	+	3.1.3.2
[Ref.: #31055]	catalase	+	1.11.1.6
[Ref.: #31055]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21220]	Sample type/isolated from	salt mine
[Ref.: #21220]	Geographic location (country and/or sea, region)	Xinjiang province, Wensu county
[Ref.: #21220]	Country	China
[Ref.: #21220]	Country ISO 3 Code	CHN
[Ref.: #21220]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Salt mine in Wensu county
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21220]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21220]	Halolamina salifodinae strain WSY15-H1 16S ribosomal RNA gene, partial sequence	JX014295	1473	ENA	1202767 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halolamina salifodinae DSM 26232	GCA_017874235	contig	GenBank	1202767 tax ID	*
[Ref.: #66792]	Halolamina salifodinae DSM 26232	2913474752	draft	JGI IMG/M	1202767 tax ID	*

[Ref.: #21220]	GC-content	65.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31055]	GC-content	65.4 mol%

Availability in culture collections External links

[Ref.: #21220]

Culture collection no.

DSM 26232, CGMCC 1.12371, JCM 18548

[Ref.: #88053]

SI-ID 403096

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt.	Cha IT, Yim KJ, Song HS, Lee HW, Hyun DW, Kim KN, Choi JS, Kim D, Lee SJ, Seo MJ, Choi HJ, Bae JW, Rhee SK, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0145-0	2014	*
Phylogeny	Halolamina salifodinae sp. nov. and Halolamina salina sp. nov., two extremely halophilic archaea isolated from a salt mine.	Zhang WY, Huo YY, Zhang XQ, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.050864-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21220

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26232

#31055

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27385 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#88053

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403096.1 )

#27385

IJSEM 4380 2013 ( DOI 10.1099/ijs.0.050864-0 , PubMed 23832972 )

* These data were automatically processed and therefore are not curated

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