Natronorubrum texcoconense (DSM 25211, CECT 8067, JCM 17497)

Name: Natronorubrum texcoconense (DSM 25211, CECT 8067, JCM 17497)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24071

Type strain

Strain Designation B4

Culture col. no. DSM 25211 CECT 8067 JCM 17497 B4

NCBI tax ID(s) 1095776

Special Collections DSMZ JCM

Links

Natronorubrum texcoconense B4 is a mesophilic prokaryote that was isolated from soil saline-alkaline.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 388326

CECT 8067,JCM 17497,DSM 25211

@ref 20215

Last LPSN update 2025-12-16 09:52:46

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Natronorubrum

Species Natronorubrum texcoconense

Full scientific name Natronorubrum texcoconense Ruiz-Romero et al. 2013

Morphology

Colony morphology

20676

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20676	NATRONOBACTERIA MEDIUM (DSMZ Medium 371)		Medium recipe at MediaDive	Name: NATRONOBACTERIA MEDIUM (DSMZ Medium 371) Composition: NaCl 200.0 g/l Agar 20.0 g/l Casamino acids 5.0 g/l Yeast extract 5.0 g/l Na2CO3 5.0 g/l Na2-glutamate 1.0 g/l KH2PO4 1.0 g/l KCl 1.0 g/l NH4Cl 1.0 g/l MgSO4 x 7 H2O 0.24 g/l CaSO4 x 2 H2O 0.17 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20676	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20676	soil saline-alkaline	former lake of Texcoco (19°30'52''N 98°59'24''W)	Mexico	MEX	North America	19.5144	-98.99 19.5144/-98.99
67770	Soil of the former lake Texcoco in Mexico

Taxonmaps

69479

Global distribution of 16S sequence HQ456225 (>99% sequence identity) for Natronorubrum from Microbeatlas

Aquatic Samples	15
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	16

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20676	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2636416021 annotated assembly for Natronorubrum texcoconense B4,CECT 8067,JCM 17497	contig	GCA_900100335	1095776.3	2636416021	1095776	69.71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20676	Natronorubrum texcoconense strain B4 16S ribosomal RNA gene, partial sequence	HQ456225	1394		1095776
124043	Natronorubrum texcoconense gene for 16S ribosomal RNA, partial sequence, strain: JCM 17497.	AB935414	1474		1095776

GC content

@ref	GC-content (mol%)	Method
20676	63.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Natronorubrum texcoconense B4,CECT 8067,JCM 17497
NCBI: GCA_900100335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.60	no
125439	motility	BacteriaNetⓘ	yes	52.60	no
125439	gram_stain	BacteriaNetⓘ	negative	86.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	83.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natronorubrum texcoconense sp. nov., a haloalkaliphilic archaeon isolated from soil of the former lake Texcoco (Mexico).	Ruiz-Romero E, Valenzuela-Encinas C, Lopez-Ramirez MP, de los Angeles Coutino-Coutino M, Marsch R, Dendooven L	Arch Microbiol	10.1007/s00203-012-0852-8	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20676	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25211
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Natronorubrum texcoconense (DSM 25211, CECT 8067, JCM 17497)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900100335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media