Name: Chlorobium luteolum 2530
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2406

Type strain:

Species: Chlorobium luteolum

Strain Designation: 2530, my 2610

Culture col. no.: DSM 273, CIP 108454

Strain history: CIP <- 2004, J. F. Imhoff, Kiel Univ., Kiel, Germany: strain my 2610

NCBI tax ID(s): 319225 (strain), 1100 (species)

SI-ID 47129

DSM 273, CIP 108454

Other strains from Chlorobium luteolum

C. luteolum 6132, DSM 262

Section

Chlorobium luteolum 2530 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from meromictic lake.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chlorobiota*
	Class	*Chlorobiia*
	Order	*Chlorobiales*
	Family	*Chlorobiaceae*
	Genus	*Chlorobium*
	Species	**Chlorobium luteolum**
	Full Scientific Name (LPSN)	Chlorobium luteolum (Schmidle 1901) Imhoff 2003

	Synonym	Pelodictyon luteolum
	Synonym	Schmidlea luteola
	Synonym	Aphanothece luteola

Information on morphological and physiological properties Morphology

[Ref.: #120692]	Gram stain	positive
[Ref.: #69480]	Gram stain	negative Confidence in %99.969

[Ref.: #120692]	Cell shape	coccus-shaped

[Ref.: #120692]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #14]

Culture medium

PFENNIG'S MEDIUM II WITH SALT (DSMZ Medium 40)

[Ref.: #14]

Culture medium growth

[Ref.: #14]

Culture medium link

Medium recipe at MediaDive

[Ref.: #14]

Culture medium composition

expand / minimize

[Ref.: #32809]

Culture medium

MEDIUM 224 - for anaerobic bacteria TGV

[Ref.: #32809]

Culture medium growth

[Ref.: #32809]

Culture medium composition

expand / minimize

[Ref.: #120692]

Culture medium

CIP Medium 20

[Ref.: #120692]

Culture medium growth

[Ref.: #120692]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120692]

Culture medium

CIP Medium 588

[Ref.: #120692]

Culture medium growth

[Ref.: #120692]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #14]			growth	25 °C
[Ref.: #32809]			growth	25 °C

[Ref.: #14]	Temperature range	mesophilic
[Ref.: #32809]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #14]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.981

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #14]	Sample type/isolated from	meromictic lake
[Ref.: #14]	Country	Norway
[Ref.: #14]	Country ISO 3 Code	NOR
[Ref.: #14]	Continent	Europe

[Ref.: #120692]	Sample type/isolated from	Environment, Meromitic lake
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Lake (large)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #14]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120692]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Chlorobium luteolum partial 16S rRNA-23S rRNA ITS, strain DSM 273	AM049296	508	ENA	319225 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pelodictyon luteolum DSM 273	GCA_000012485	complete	GenBank	319225 tax ID	*
[Ref.: #66792]	Chlorobium luteolum DSM 273	319225.5	complete	PATRIC	319225 tax ID	*
[Ref.: #66792]	Pelodictyon luteolum DSM 273	637000205	complete	JGI IMG/M	319225 tax ID	*

[Ref.: #14]

GC-content

58.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pelodictyon luteolum DSM 273 DSM 273 NCBI: GCA_000012485.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pelodictyon luteolum DSM 273 DSM 273 NCBI: GCA_000012485.1
[Ref.: #69480]	motile	no	89.565	no
[Ref.: #69480]	flagellated	no	97.695	no
[Ref.: #69480]	gram-positive	no	98.337	no
[Ref.: #69480]	anaerobic	yes	98.83	yes
[Ref.: #69480]	halophile	no	87.829	no
[Ref.: #69480]	spore-forming	no	93.44	no
[Ref.: #69480]	thermophile	no	81.155	yes
[Ref.: #69480]	glucose-util	yes	56.947	no
[Ref.: #69480]	aerobic	no	97.788	yes
[Ref.: #69480]	glucose-ferment	no	83.98	no

Availability in culture collections External links

[Ref.: #14]

Culture collection no.

DSM 273, CIP 108454

[Ref.: #71959]

SI-ID 47129

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Physiological characterization of a halotolerant anoxygenic phototrophic Fe(II)-oxidizing green-sulfur bacterium isolated from a marine sediment.	Laufer K, Niemeyer A, Nikeleit V, Halama M, Byrne JM, Kappler A	FEMS Microbiol Ecol	10.1093/femsec/fix054	2017	*
Metabolism	Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly.	Llorens-Mares T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO	ISME J	10.1038/ismej.2016.93	2016	*
Phylogeny	Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species.	Gupta RS, Lorenzini E	BMC Evol Biol	10.1186/1471-2148-7-71	2007	*

References

#14	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 273

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32809 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71959

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47129.1 )

#120692 Collection of Institut Pasteur ; Curators of the CIP; CIP 108454
* These data were automatically processed and therefore are not curated

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Pelodictyon luteolum DSM 273 DSM 273

Pelodictyon luteolum DSM 273 DSM 273

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