Chlorobium limicola (DSM 245, NBRC 103803, 6330)

Name: Chlorobium limicola (DSM 245, NBRC 103803, 6330)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2403

Type strain

Strain Designation 6330

Culture col. no. DSM 245 NBRC 103803 6330

NCBI tax ID(s) 290315 1092

Special Collections DSMZ

History DSMZ <- N. Pfennig, 6330

Links

Chlorobium limicola 6330 is an anaerobe bacterium that was isolated from hot spring.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 47112

DSM 245,NBRC 103803

@ref 20215

Last LPSN update 2026-05-29 08:25:28

Domain Bacteria

Phylum Chlorobiota

Class Chlorobiia

Order Chlorobiales

Family Chlorobiaceae

Genus Chlorobium

Species Chlorobium limicola

Full scientific name Chlorobium limicola Nadson 1906 (Approved Lists 1980)

BacDive ID	Other strains from **Chlorobium limicola** (2)	Type strain
2404	C. limicola 1830, DSM 248
2405	C. limicola 9330, DSM 258, Pfennig 9330

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.477
125438	negative	92.912

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
86	PFENNIG'S MEDIUM II (modified 1988, for green sulfur bacteria) (DSMZ Medium 29)		Medium recipe at MediaDive	Name: PFENNIG'S MEDIUM II (DSMZ Medium 29) Composition: NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.52 g/l Ammonium chloride 0.364 g/l KCl 0.364 g/l KH2PO4 0.364 g/l Dextrose 0.26 g/l Pyruvic acid sodium salt 0.26 g/l Ammonium acetate 0.26 g/l Yeast extract 0.25 g/l CaCl2 x 2 H2O 0.25 g/l Resazurin 0.00225 g/l HCl 0.002002 g/l FeSO4 x 7 H2O 0.00156 g/l Vitamin B12 0.001 g/l H3BO3 0.000312 g/l CoCl2 x 6 H2O 0.0001976 g/l MnCl2 x 4 H2O 0.000104 g/l ZnCl2 7.28e-05 g/l Na2MoO4 x 2 H2O 3.744e-05 g/l NiCl2 x 6 H2O 2.496e-05 g/l CuCl2 x 2 H2O 2.08e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
86	positive	growth	25

Physiology and metabolism

Oxygen tolerance

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.883

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	CMP-KDO biosynthesis	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	kanosamine biosynthesis II	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	isoleucine metabolism	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	pentose phosphate pathway	81.82	9 of 11
66794	methylglyoxal degradation	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	chorismate metabolism	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	NAD metabolism	72.22	13 of 18
66794	propanol degradation	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	vitamin B12 metabolism	70.59	24 of 34
66794	isoprenoid biosynthesis	69.23	18 of 26
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	non-pathway related	65.79	25 of 38
66794	purine metabolism	64.89	61 of 94
66794	pyrimidine metabolism	64.44	29 of 45
66794	proline metabolism	63.64	7 of 11
66794	gluconeogenesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	starch degradation	60	6 of 10
66794	glycogen metabolism	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	Entner Doudoroff pathway	60	6 of 10
66794	glycolysis	58.82	10 of 17
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	nitrate assimilation	55.56	5 of 9
66794	metabolism of disaccharids	54.55	6 of 11
66794	vitamin B6 metabolism	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	lysine metabolism	52.38	22 of 42
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	adipate degradation	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	vitamin E metabolism	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	histidine metabolism	48.28	14 of 29
66794	tryptophan metabolism	47.37	18 of 38
66794	urea cycle	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	chlorophyll metabolism	44.44	8 of 18
66794	glutathione metabolism	42.86	6 of 14
66794	oxidative phosphorylation	41.76	38 of 91
66794	carotenoid biosynthesis	40.91	9 of 22
66794	glycine metabolism	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	ketogluconate metabolism	37.5	3 of 8
66794	cholesterol biosynthesis	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	degradation of pentoses	32.14	9 of 28
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phenol degradation	30	6 of 20
66794	degradation of hexoses	27.78	5 of 18
66794	d-xylose degradation	27.27	3 of 11
66794	polyamine pathway	26.09	6 of 23
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	sulfate reduction	23.08	3 of 13
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
86	hot spring	California	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
86	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2046v1 assembly for Chlorobium limicola DSM 245	complete	GCA_000020465	290315.5	642555121	290315	98.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Chlorobium limicola partial 16S rRNA-23S rRNA ITS, strain DSM 245	AM049284	501		290315
86	Chlorobium limicola partial 16S rRNA gene, strain DSM246	AJ290824	1243		1092

GC content

@ref	GC-content (mol%)	Method
86	51.0
86	51.3	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2046v1 assembly for Chlorobium limicola DSM 245
BV-BRC: 290315.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	83.49	no
125439	gram_stain	BacteriaNetⓘ	negative	97.48	no
125439	motility	BacteriaNetⓘ	yes	42.47	no
125439	spore_formation	BacteriaNetⓘ	no	99.88	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chlorobium limicola DSM 245 DSM 245
NCBI: GCA_000020465.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	92.91	no
125438	anaerobic	anaerobicⓘ	yes	68.04	no
125438	aerobic	aerobicⓘ	no	75.93	no
125438	spore-forming	spore-formingⓘ	no	83.45	no
125438	thermophilic	thermophileⓘ	no	88.50	yes
125438	flagellated	motile2+ⓘ	no	74.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Arsenic Accumulation in Microbial Biomass and the Interpretation of Signals of Early Arsenic-Based Metabolisms.	Madrigal-Trejo D, Baldes MJ, Tamura N, Klepac-Ceraj V, Bosak T.	Geobiology	10.1111/gbi.70024	2025
	Draft Genome Sequence of Lampenflora Chlorobium limicola Strain Frasassi in a Sulfidic Cave System.	Mansor M, Macalady JL.	Genome Announc	10.1128/genomea.00357-16	2016
Metabolism	Endosymbiotic bacteria within the nematode-trapping fungus Arthrobotrys musiformis and their potential roles in nitrogen cycling.	Zheng H, Chen T, Li W, Hong J, Xu J, Yu Z.	Front Microbiol	10.3389/fmicb.2024.1349447	2024
Pathogenicity	Antimicrobial activity of gallic acid against food-related Pseudomonas strains and its use as biocontrol tool to improve the shelf life of fresh black truffles.	Sorrentino E, Succi M, Tipaldi L, Pannella G, Maiuro L, Sturchio M, Coppola R, Tremonte P.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2017.11.026	2018
	Ergothioneine, Ovothiol A, and Selenoneine-Histidine-Derived, Biologically Significant, Trace Global Alkaloids.	Cordell GA, Lamahewage SNS.	Molecules	10.3390/molecules27092673	2022
Phylogeny	Metagenomic analysis reveals a green sulfur bacterium as a potential coral symbiont.	Cai L, Zhou G, Tian RM, Tong H, Zhang W, Sun J, Ding W, Wong YH, Xie JY, Qiu JW, Liu S, Huang H, Qian PY.	Sci Rep	10.1038/s41598-017-09032-4	2017
	Deep Learning Encoding for Rapid Sequence Identification on Microbiome Data.	Borgman J, Stark K, Carson J, Hauser L.	Front Bioinform	10.3389/fbinf.2022.871256	2022
	An alternative path for the evolution of biological nitrogen fixation.	Boyd ES, Hamilton TL, Peters JW.	Front Microbiol	10.3389/fmicb.2011.00205	2011
Metabolism	Multiple types of 8-vinyl reductases for (bacterio)chlorophyll biosynthesis occur in many green sulfur bacteria.	Liu Z, Bryant DA.	J Bacteriol	10.1128/jb.05520-11	2011
Genetics	Osmotic Adaptation and Compatible Solute Biosynthesis of Phototrophic Bacteria as Revealed from Genome Analyses.	Imhoff JF, Rahn T, Kunzel S, Keller A, Neulinger SC.	Microorganisms	10.3390/microorganisms9010046	2020
Phylogeny	Phylogeny of green sulfur bacteria on the basis of gene sequences of 16S rRNA and of the Fenna-Matthews-Olson protein.	Alexander B, Andersen JH, Cox RP, Imhoff JF.	Arch Microbiol	10.1007/s00203-002-0432-4	2002
Metabolism	Distribution of glucan-branching enzymes among prokaryotes.	Suzuki E, Suzuki R.	Cell Mol Life Sci	10.1007/s00018-016-2243-9	2016
	Metabolic analysis of Chlorobium chlorochromatii CaD3 reveals clues of the symbiosis in 'Chlorochromatium aggregatum'.	Cerqueda-Garcia D, Martinez-Castilla LP, Falcon LI, Delaye L.	ISME J	10.1038/ismej.2013.207	2014
	Nutrient Acquisition and the Metabolic Potential of Photoferrotrophic Chlorobi.	Thompson KJ, Simister RL, Hahn AS, Hallam SJ, Crowe SA.	Front Microbiol	10.3389/fmicb.2017.01212	2017
Metabolism	Light-dependent sulfide oxidation in the anoxic zone of the Chesapeake Bay can be explained by small populations of phototrophic bacteria.	Findlay AJ, Bennett AJ, Hanson TE, Luther GW.	Appl Environ Microbiol	10.1128/aem.02062-15	2015
Phylogeny	Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes.	Loy A, Duller S, Baranyi C, Mussmann M, Ott J, Sharon I, Beja O, Le Paslier D, Dahl C, Wagner M.	Environ Microbiol	10.1111/j.1462-2920.2008.01760.x	2009
	The Histidine Biosynthetic Genes in the Superphylum Bacteroidota-Rhodothermota-Balneolota-Chlorobiota: Insights into the Evolution of Gene Structure and Organization.	Del Duca S, Riccardi C, Vassallo A, Fontana G, Castronovo LM, Chioccioli S, Fani R.	Microorganisms	10.3390/microorganisms9071439	2021
	In silico analysis of bacterial arsenic islands reveals remarkable synteny and functional relatedness between arsenate and phosphate.	Li H, Li M, Huang Y, Rensing C, Wang G.	Front Microbiol	10.3389/fmicb.2013.00347	2013
Metabolism	Evolution of molybdenum nitrogenase during the transition from anaerobic to aerobic metabolism.	Boyd ES, Costas AM, Hamilton TL, Mus F, Peters JW.	J Bacteriol	10.1128/jb.02611-14	2015
Metabolism	Transformation of Chlorobium limicola by a plasmid that confers the ability to utilize thiosulfate.	Mendez-Alvarez S, Pavon V, Esteve I, Guerrero R, Gaju N.	J Bacteriol	10.1128/jb.176.23.7395-7397.1994	1994
Metabolism	SoxAX binding protein, a novel component of the thiosulfate-oxidizing multienzyme system in the green sulfur bacterium Chlorobium tepidum.	Ogawa T, Furusawa T, Nomura R, Seo D, Hosoya-Matsuda N, Sakurai H, Inoue K.	J Bacteriol	10.1128/jb.00634-08	2008
	Close Interspecies Interactions between Prokaryotes from Sulfureous Environments.	Muller J, Overmann J.	Front Microbiol	10.3389/fmicb.2011.00146	2011
	An obligately photosynthetic bacterial anaerobe from a deep-sea hydrothermal vent.	Beatty JT, Overmann J, Lince MT, Manske AK, Lang AS, Blankenship RE, Van Dover CL, Martinson TA, Plumley FG.	Proc Natl Acad Sci U S A	10.1073/pnas.0503674102	2005
Phylogeny	Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle.	Wright JJ, Mewis K, Hanson NW, Konwar KM, Maas KR, Hallam SJ.	ISME J	10.1038/ismej.2013.152	2014
Metabolism	Mini-Review: Ergothioneine and Ovothiol Biosyntheses, an Unprecedented Trans-Sulfur Strategy in Natural Product Biosynthesis.	Naowarojna N, Cheng R, Chen L, Quill M, Xu M, Zhao C, Liu P.	Biochemistry	10.1021/acs.biochem.8b00239	2018
Enzymology	Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.	Gregersen LH, Bryant DA, Frigaard NU.	Front Microbiol	10.3389/fmicb.2011.00116	2011
	Self-targeting by CRISPR: gene regulation or autoimmunity?	Stern A, Keren L, Wurtzel O, Amitai G, Sorek R.	Trends Genet	10.1016/j.tig.2010.05.008	2010
Metabolism	Distribution analysis of hydrogenases in surface waters of marine and freshwater environments.	Barz M, Beimgraben C, Staller T, Germer F, Opitz F, Marquardt C, Schwarz C, Gutekunst K, Vanselow KH, Schmitz R, LaRoche J, Schulz R, Appel J.	PLoS One	10.1371/journal.pone.0013846	2010
Phylogeny	The Membrane Attack Complex/Perforin Superfamily.	Moreno-Hagelsieb G, Vitug B, Medrano-Soto A, Saier MH.	J Mol Microbiol Biotechnol	10.1159/000481286	2017
	Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom.	Bhatnagar S, Cowley ES, Kopf SH, Perez Castro S, Kearney S, Dawson SC, Hanselmann K, Ruff SE.	Environ Microbiome	10.1186/s40793-019-0348-0	2020
	Gene expression system in green sulfur bacteria by conjugative plasmid transfer.	Azai C, Harada J, Hirozo OO.	PLoS One	10.1371/journal.pone.0082345	2013
Genetics	Genomic analysis reveals key aspects of prokaryotic symbiosis in the phototrophic consortium "Chlorochromatium aggregatum".	Liu Z, Muller J, Li T, Alvey RM, Vogl K, Frigaard NU, Rockwell NC, Boyd ES, Tomsho LP, Schuster SC, Henke P, Rohde M, Overmann J, Bryant DA.	Genome Biol	10.1186/gb-2013-14-11-r127	2013
	Evolution of symbiotic bacteria in the distal human intestine.	Xu J, Mahowald MA, Ley RE, Lozupone CA, Hamady M, Martens EC, Henrissat B, Coutinho PM, Minx P, Latreille P, Cordum H, Van Brunt A, Kim K, Fulton RS, Fulton LA, Clifton SW, Wilson RK, Knight RD, Gordon JI.	PLoS Biol	10.1371/journal.pbio.0050156	2007
Pathogenicity	Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)).	Plugge CM, Henstra AM, Worm P, Swarts DC, Paulitsch-Fuchs AH, Scholten JC, Lykidis A, Lapidus AL, Goltsman E, Kim E, McDonald E, Rohlin L, Crable BR, Gunsalus RP, Stams AJ, McInerney MJ.	Stand Genomic Sci	10.4056/sigs.2996379	2012
Metabolism	Linking hydrothermal geochemistry to organismal physiology: physiological versatility in Riftia pachyptila from sedimented and basalt-hosted vents.	Robidart JC, Roque A, Song P, Girguis PR.	PLoS One	10.1371/journal.pone.0021692	2011
Enzymology	Regulation of dissimilatory sulfur oxidation in the purple sulfur bacterium allochromatium vinosum.	Grimm F, Franz B, Dahl C.	Front Microbiol	10.3389/fmicb.2011.00051	2011
Enzymology	Detection of secreted antimicrobial peptides isolated from cell-free culture supernatant of Paenibacillus alvei AN5.	Alkotaini B, Anuar N, Kadhum AA, Sani AA.	J Ind Microbiol Biotechnol	10.1007/s10295-013-1259-5	2013
Metabolism	Identification of a gene essential for the first committed step in the biosynthesis of bacteriochlorophyll c.	Liu Z, Bryant DA.	J Biol Chem	10.1074/jbc.m111.249433	2011
	Effect of sulfate on low-temperature anaerobic digestion.	Madden P, Al-Raei AM, Enright AM, Chinalia FA, de Beer D, O'Flaherty V, Collins G.	Front Microbiol	10.3389/fmicb.2014.00376	2014
Metabolism	Evolution and functional characterization of the RH50 gene from the ammonia-oxidizing bacterium Nitrosomonas europaea.	Cherif-Zahar B, Durand A, Schmidt I, Hamdaoui N, Matic I, Merrick M, Matassi G.	J Bacteriol	10.1128/jb.01089-07	2007
Genetics	Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus.	Tang KH, Barry K, Chertkov O, Dalin E, Han CS, Hauser LJ, Honchak BM, Karbach LE, Land ML, Lapidus A, Larimer FW, Mikhailova N, Pitluck S, Pierson BK, Blankenship RE.	BMC Genomics	10.1186/1471-2164-12-334	2011
	Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity.	Steward GF, Jenkins BD, Ward BB, Zehr JP.	Appl Environ Microbiol	10.1128/aem.70.3.1455-1465.2004	2004
Enzymology	Molecular evolution of urea amidolyase and urea carboxylase in fungi.	Strope PK, Nickerson KW, Harris SD, Moriyama EN.	BMC Evol Biol	10.1186/1471-2148-11-80	2011
Proteome	Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.	Chen C, Natale DA, Finn RD, Huang H, Zhang J, Wu CH, Mazumder R.	PLoS One	10.1371/journal.pone.0018910	2011
Genetics	A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.	D'Amore R, Ijaz UZ, Schirmer M, Kenny JG, Gregory R, Darby AC, Shakya M, Podar M, Quince C, Hall N.	BMC Genomics	10.1186/s12864-015-2194-9	2016
Genetics	Genome sequence and global gene expression of Q54, a new phage species linking the 936 and c2 phage species of Lactococcus lactis.	Fortier LC, Bransi A, Moineau S.	J Bacteriol	10.1128/jb.00581-06	2006
Genetics	Information theoretic perspective on genome clustering.	Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.	Saudi J Biol Sci	10.1016/j.sjbs.2020.12.039	2021
Metabolism	Diversity of beta-propeller phytase genes in the intestinal contents of grass carp provides insight into the release of major phosphorus from phytate in nature.	Huang H, Shi P, Wang Y, Luo H, Shao N, Wang G, Yang P, Yao B.	Appl Environ Microbiol	10.1128/aem.02188-08	2009
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Phylogeny	Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species.	Gupta RS, Lorenzini E.	BMC Evol Biol	10.1186/1471-2148-7-71	2007
	Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations.	Zhang L, Hurek T, Reinhold-Hurek B.	Nucleic Acids Res	10.1093/nar/gni156	2005
	Functional Promiscuity of Homologues of the Bacterial ArsA ATPases.	Castillo R, Saier MH.	Int J Microbiol	10.1155/2010/187373	2010
Metabolism	Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes.	Makarova KS, Wolf YI, Koonin EV.	Biol Direct	10.1186/1745-6150-4-19	2009
	Heterologous and High Production of Ergothioneine in Bacillus licheniformis by Using Genes from Anaerobic Bacteria.	Liu Z, Xiao F, Zhang Y, Lu J, Li Y, Shi G.	Metabolites	10.3390/metabo15010045	2025
	Photoautotrophic removal of hydrogen sulfide from biogas using purple and green sulfur bacteria.	Struk M, Sepulveda-Munoz CA, Kushkevych I, Munoz R.	J Hazard Mater	10.1016/j.jhazmat.2022.130337	2023
	A Review of Novel Antioxidant Ergothioneine: Biosynthesis Pathways, Production, Function and Food Applications.	Zhang H, Liu Z, Wang Z, Lei Z, Jia Y, Chen W, Shi R, Wang C.	Foods	10.3390/foods14091588	2025
	Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis.	Leisinger F, Burn R, Meury M, Lukat P, Seebeck FP.	J Am Chem Soc	10.1021/jacs.8b12596	2019
	The Current Situation and Future Trends of Ergothioneine in Biology and Medical Research: A Bibliometric Analysis.	Fu Y, Guan H, Yu M, Jiang P, He X, Bao J, Zhang B, Li Y.	J Multidiscip Healthc	10.2147/jmdh.s547548	2025
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Metabolism	Comparative Transcriptomics Sheds Light on Remodeling of Gene Expression during Diazotrophy in the Thermophilic Methanogen Methanothermococcus thermolithotrophicus.	Maslac N, Sidhu C, Teeling H, Wagner T.	mBio	10.1128/mbio.02443-22	2022
Biotechnology	Anoxygenic photosynthesis with emphasis on green sulfur bacteria and a perspective for hydrogen sulfide detoxification of anoxic environments.	Kushkevych I, Prochazka V, Vitezova M, Dordevic D, Abd El-Salam M, Rittmann SKR.	Front Microbiol	10.3389/fmicb.2024.1417714	2024
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Metabolism	Atomic structure of the bacteriochlorophyll c assembly in intact chlorosomes from Chlorobium limicola determined by solid-state NMR.	Akutsu H, Egawa A, Fujiwara T.	Photosynth Res	10.1007/s11120-009-9523-2	2010
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Metabolism	Stacking of bacteriochlorophyll c macrocycles in chlorosome from Chlorobium limicola as revealed by intermolecular 13C magnetic-dipole correlation, X-ray diffraction, and quadrupole coupling in 25Mg NMR.	Kakitani Y, Koyama Y, Shimoikeda Y, Nakai T, Utsumi H, Shimizu T, Nagae H.	Biochemistry	10.1021/bi801651w	2009
Metabolism	Phosphorus deficiency and kinetics of alkaline phosphatase in isolates and natural populations of phototrophic sulphur bacteria.	Baneras L, Ros-Ponsati M, Cristina XP, Garcia-Gil JL, Borrego CM.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2010.00895.x	2010
Metabolism	Isotopic replacement of pigments and a lipid in chlorosomes from Chlorobium limicola: characterization of the resultant chlorosomes.	Kakitani Y, Harada K, Mizoguchi T, Koyama Y.	Biochemistry	10.1021/bi602586g	2007
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Metabolism	Assembly of a mixture of isomeric BChl c from Chlorobium limicola as determined by intermolecular 13C-13C dipolar correlations: coexistence of dimer-based and pseudo-monomer-based stackings.	Kakitani Y, Nagae H, Mizoguchi T, Egawa A, Akiba K, Fujiwara T, Akutsu H, Koyama Y.	Biochemistry	10.1021/bi0525728	2006
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Metabolism	Parallel electron donation pathways to cytochrome c(z) in the type I homodimeric photosynthetic reaction center complex of Chlorobium tepidum.	Tsukatani Y, Azai C, Kondo T, Itoh S, Oh-Oka H.	Biochim Biophys Acta	10.1016/j.bbabio.2008.05.002	2008
Metabolism	Sepiapterin reductases from Chlorobium tepidum and Chlorobium limicola catalyze the synthesis of L-threo-tetrahydrobiopterin from 6-pyruvoyltetrahydropterin.	Choi YK, Jun SR, Cha EY, Park JS, Park YS.	FEMS Microbiol Lett	10.1016/j.femsle.2004.10.044	2005
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Metabolism	[Factors controlling the biosynthesis of chlorosome antenna bacteriochlorophylls in green filamentous anoxygenic phototrophic bacteria of the family Oscillochloridaceae].	Taisova AS, Keppen OI, Novikov AA, Naumova AA, Fetisov ZG.	Mikrobiologiia	10.1134/s0026261706020044	2006
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Metabolism	Characterization of isocitrate dehydrogenase from the green sulfur bacterium Chlorobium limicola. A carbon dioxide-fixing enzyme in the reductive tricarboxylic acid cycle.	Kanao T, Kawamura M, Fukui T, Atomi H, Imanaka T.	Eur J Biochem	10.1046/j.1432-1033.2002.02849.x	2002
Metabolism	Elucidating regulatory processes of intense physical activity by multi-omics analysis.	Nakayasu ES, Gritsenko MA, Kim YM, Kyle JE, Stratton KG, Nicora CD, Munoz N, Navarro KM, Claborne D, Gao Y, Weitz KK, Paurus VL, Bloodsworth KJ, Allen KA, Bramer LM, Montes F, Clark KA, Tietje G, Teeguarden J, Burnum-Johnson KE.	Mil Med Res	10.1186/s40779-023-00477-5	2023
Metabolism	Identification of a thiosulfate utilization gene cluster from the green phototrophic bacterium Chlorobium limicola.	Verte F, Kostanjevecki V, De Smet L, Meyer TE, Cusanovich MA, Van Beeumen JJ.	Biochemistry	10.1021/bi011404m	2002
Enzymology	ATP-citrate lyase from the green sulfur bacterium Chlorobium limicola is a heteromeric enzyme composed of two distinct gene products.	Kanao T, Fukui T, Atomi H, Imanaka T.	Eur J Biochem	10.1046/j.1432-1033.2001.02034.x	2001
Metabolism	Physiological Studies of Chlorobiaceae Suggest that Bacillithiol Derivatives Are the Most Widespread Thiols in Bacteria.	Hiras J, Sharma SV, Raman V, Tinson RAJ, Arbach M, Rodrigues DF, Norambuena J, Hamilton CJ, Hanson TE.	mBio	10.1128/mbio.01603-18	2018
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Enzymology	Catalytic Asymmetry in Homodimeric H⁺-Pumping Membrane Pyrophosphatase Demonstrated by Non-Hydrolyzable Pyrophosphate Analogs.	Anashkin VA, Malinen AM, Bogachev AV, Baykov AA.	Int J Mol Sci	10.3390/ijms22189820	2021
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Enzymology	The primary structure of soluble cytochrome c-551 from the phototrophic green sulfur bacterium Chlorobium limicola, strain Tassajara, reveals a novel c-type cytochrome.	Klarskov K, Verte F, Van Driessche G, Meyer TE, Cusanovich MA, Van Beeumen J.	Biochemistry	10.1021/bi9806706	1998
Enzymology	Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis.	Kishimoto H, Azai C, Yamamoto T, Mutoh R, Nakaniwa T, Tanaka H, Miyanoiri Y, Kurisu G, Oh-Oka H.	Curr Res Struct Biol	10.1016/j.crstbi.2023.100101	2023
Metabolism	Electron transfer towards the RCI-type photosystem in the green sulphur bacterium Chlorobium limicola forma thiosulphatophilum studied by time-resolved optical spectroscopy in vivo.	Albouy D, Joliot P, Robert B, Nitschke W.	Eur J Biochem	10.1111/j.1432-1033.1997.t01-2-00630.x	1997
Metabolism	Kinetic and biochemical analyses on the reaction mechanism of a bacterial ATP-citrate lyase.	Kanao T, Fukui T, Atomi H, Imanaka T.	Eur J Biochem	10.1046/j.1432-1033.2002.03016.x	2002
Genetics	Isolation and sequence analysis of repA from the incurable 90 MDA plasmid of Azospirillum brasilense.	Vande Broek A, Okon Y, Vanderleyden J.	DNA Seq	10.3109/10425170009033976	2000
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Enzymology	Highly purified photosynthetic reaction center (PscA/cytochrome c551)2 complex of the green sulfur bacterium Chlorobium limicola.	Oh-oka H, Kakutani S, Kamei S, Matsubara H, Iwaki M, Itoh S.	Biochemistry	10.1021/bi00040a021	1995
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Enzymology	Specific detection of green sulfur bacteria by in situ hybridization with a fluorescently labeled oligonucleotide probe.	Tuschak C, Glaeser J, Overmann J.	Arch Microbiol	10.1007/s002030050709	1999
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Enzymology	Individual Patterns of Complexity in Cystic Fibrosis Lung Microbiota, Including Predator Bacteria, over a 1-Year Period.	de Dios Caballero J, Vida R, Cobo M, Maiz L, Suarez L, Galeano J, Baquero F, Canton R, Del Campo R.	mBio	10.1128/mbio.00959-17	2017
Metabolism	Stable photobleaching of P840 in Chlorobium reaction center preparations: presence of the 42-kDa bacteriochlorophyll a protein and a 17-kDa polypeptide.	Hager-Braun C, Xie DL, Jarosch U, Herold E, Buttner M, Zimmermann R, Deutzmann R, Hauska G, Nelson N.	Biochemistry	10.1021/bi00029a039	1995
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Metabolism	Structure of the light-harvesting bacteriochlorophyll c assembly in chlorosomes from Chlorobium limicola determined by solid-state NMR.	Egawa A, Fujiwara T, Mizoguchi T, Kakitani Y, Koyama Y, Akutsu H.	Proc Natl Acad Sci U S A	10.1073/pnas.0605911104	2007
Enzymology	Evidence of chemolithoautotrophy in the bacterial community associated with Alvinella pompejana, a hydrothermal vent polychaete.	Campbell BJ, Stein JL, Cary SC.	Appl Environ Microbiol	10.1128/aem.69.9.5070-5078.2003	2003
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Enzymology	Phenylalanyl-tRNA synthetase from chloroplasts of a higher plant (Phaseolus vulgaris). Purification and comparison of its structural, functional, and immunological properties with those of the enzymes from the corresponding cytoplasm, the cyanobacterium Anacystis nidulans, and the photosynthetic green sulfur bacterium Chlorobium limicola.	Rauhut R, Gabius HJ, Cramer F.	J Biol Chem	10.1016/s0021-9258(17)35857-x	1986
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Metabolism	13C-NMR study of autotrophic CO2 fixation in Thermoproteus neutrophilus.	Schafer S, Gotz M, Eisenreich W, Bacher A, Fuchs G.	Eur J Biochem	10.1111/j.1432-1033.1989.tb15001.x	1989
Phylogeny	5S rRNA sequences of representatives of the genera Chlorobium, Prosthecochloris, Thermomicrobium, Cytophaga, Flavobacterium, Flexibacter and Saprospira and a discussion of the evolution of eubacteria in general.	Van den Eynde H, Van de Peer Y, Perry J, De Wachter R.	J Gen Microbiol	10.1099/00221287-136-1-11	1990
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Metabolism	CitE Enzymes Are Essential for Mycobacterium tuberculosis to Establish Infection in Macrophages and Guinea Pigs.	Arora G, Chaudhary D, Kidwai S, Sharma D, Singh R.	Front Cell Infect Microbiol	10.3389/fcimb.2018.00385	2018
Metabolism	Differential RNA Sequencing Implicates Sulfide as the Master Regulator of S⁰ Metabolism in Chlorobaculum tepidum and Other Green Sulfur Bacteria.	Hilzinger JM, Raman V, Shuman KE, Eddie BJ, Hanson TE.	Appl Environ Microbiol	10.1128/aem.01966-17	2018
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Enzymology	Microbial oxidation of arsenite in a subarctic environment: diversity of arsenite oxidase genes and identification of a psychrotolerant arsenite oxidiser.	Osborne TH, Jamieson HE, Hudson-Edwards KA, Nordstrom DK, Walker SR, Ward SA, Santini JM.	BMC Microbiol	10.1186/1471-2180-10-205	2010
	The amino acid sequence of ferredoxin II from Chlorobium limicola, a photosynthetic green bacterium.	Tanaka M, Haniu M, Yasunobu KT, Evans MC, Rao KK.	Biochemistry	10.1021/bi00680a021	1975
Phylogeny	Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments.	Achenbach LA, Carey J, Madigan MT.	Appl Environ Microbiol	10.1128/aem.67.7.2922-2926.2001	2001
Metabolism	Reduction of adenylylsulfate and 3'-phosphoadenylylsulfate in phototrophic bacteria.	Schmidt A, Truper HG.	Experientia	10.1007/bf01945936	1977
Phylogeny	Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins.	Li B, Lopes JS, Foster PG, Embley TM, Cox CJ.	Mol Biol Evol	10.1093/molbev/msu105	2014
Phylogeny	Comparative phylogenetic assignment of environmental sequences of genes encoding 16S rRNA and numerically abundant culturable bacteria from an anoxic rice paddy soil.	Hengstmann U, Chin KJ, Janssen PH, Liesack W.	Appl Environ Microbiol	10.1128/aem.65.11.5050-5058.1999	1999
Enzymology	Characterization of ATP citrate lyase from Chlorobium limicola.	Antranikian G, Herzberg C, Gottschalk G.	J Bacteriol	10.1128/jb.152.3.1284-1287.1982	1982
Metabolism	[Microbiologic processes in meromictic Lake Sakovo].	Gorlenko VM, Chebotarev EN.	Mikrobiologiia		1981
Enzymology	[Carbonic anhydrase activity of phototropic bacteria].	Ivanovskii RN, Rodova NA.	Mikrobiologiia		1977
Phylogeny	Construction of a phylogenetic tree of photosynthetic prokaryotes based on average similarities of whole genome sequences.	Satoh S, Mimuro M, Tanaka A.	PLoS One	10.1371/journal.pone.0070290	2013
	Control of Oxidative Sulfur Metabolism of Chlorobium limicola forma thiosulfatophilum.	Cork D, Mathers J, Maka A, Srnak A.	Appl Environ Microbiol	10.1128/aem.49.2.269-272.1985	1985
Metabolism	Evidence for autotrophic CO2 fixation via the reductive tricarboxylic acid cycle by members of the epsilon subdivision of proteobacteria.	Hugler M, Wirsen CO, Fuchs G, Taylor CD, Sievert SM.	J Bacteriol	10.1128/jb.187.9.3020-3027.2005	2005
Metabolism	Both forward and reverse TCA cycles operate in green sulfur bacteria.	Tang KH, Blankenship RE.	J Biol Chem	10.1074/jbc.m110.157834	2010
Metabolism	Exciton interaction among chlorophyll molecules in bacteriochlorophyllaproteins and bacteriochlorophyllareaction center complexes from green bacteria.	Olson JM, Ke B, Thompson KH.	Biochim Biophys Acta	10.1016/0005-2728(76)90028-1	1976
	Photosynthetic reaction center genes in green sulfur bacteria and in photosystem 1 are related.	Buttner M, Xie DL, Nelson H, Pinther W, Hauska G, Nelson N.	Proc Natl Acad Sci U S A	10.1073/pnas.89.17.8135	1992
Phylogeny	Event extraction of bacteria biotopes: a knowledge-intensive NLP-based approach.	Ratkovic Z, Golik W, Warnier P.	BMC Bioinformatics	10.1186/1471-2105-13-s11-s8	2012
	Further perspective on the catalytic core and secondary structure of ribonuclease P RNA.	Haas ES, Brown JW, Pitulle C, Pace NR.	Proc Natl Acad Sci U S A	10.1073/pnas.91.7.2527	1994
Metabolism	Structural model and spectroscopic characteristics of the FMO antenna protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum.	Wen J, Tsukatani Y, Cui W, Zhang H, Gross ML, Bryant DA, Blankenship RE.	Biochim Biophys Acta	10.1016/j.bbabio.2010.09.008	2011
Metabolism	Characterization of Chlorobium tepidum chlorosomes: a calculation of bacteriochlorophyll c per chlorosome and oligomer modeling.	Montano GA, Bowen BP, LaBelle JT, Woodbury NW, Pizziconi VB, Blankenship RE.	Biophys J	10.1016/s0006-3495(03)74678-5	2003
	Chlorobium limicola forma thiosulfatophilum: Biocatalyst in the Production of Sulfur and Organic Carbon from a Gas Stream Containing H(2)S and CO(2).	Cork DJ, Garunas R, Sajjad A.	Appl Environ Microbiol	10.1128/aem.45.3.913-918.1983	1983
Metabolism	Biochemical and molecular characterization of a Na+-translocating F1Fo-ATPase from the thermoalkaliphilic bacterium Clostridium paradoxum.	Ferguson SA, Keis S, Cook GM.	J Bacteriol	10.1128/jb.00128-06	2006
Enzymology	The reductive tricarboxylic acid cycle of carbon dioxide assimilation: initial studies and purification of ATP-citrate lyase from the green sulfur bacterium Chlorobium tepidum.	Wahlund TM, Tabita FR.	J Bacteriol	10.1128/jb.179.15.4859-4867.1997	1997
Pathogenicity	Novel antibiotics targeting respiratory ATP synthesis in Gram-positive pathogenic bacteria.	Balemans W, Vranckx L, Lounis N, Pop O, Guillemont J, Vergauwen K, Mol S, Gilissen R, Motte M, Lancois D, De Bolle M, Bonroy K, Lill H, Andries K, Bald D, Koul A.	Antimicrob Agents Chemother	10.1128/aac.00273-12	2012
Phylogeny	Sulfur bacteria in wastewater stabilization ponds periodically affected by the 'red-water' phenomenon.	Belila A, Abbas B, Fazaa I, Saidi N, Snoussi M, Hassen A, Muyzer G.	Appl Microbiol Biotechnol	10.1007/s00253-012-3931-5	2013
Enzymology	The Crystal Structure of Thermotoga maritima Class III Ribonucleotide Reductase Lacks a Radical Cysteine Pre-Positioned in the Active Site.	Aurelius O, Johansson R, Bagenholm V, Lundin D, Tholander F, Balhuizen A, Beck T, Sahlin M, Sjoberg BM, Mulliez E, Logan DT.	PLoS One	10.1371/journal.pone.0128199	2015
Genetics	A new pheromone trail-based genetic algorithm for comparative genome assembly.	Zhao F, Zhao F, Li T, Bryant DA.	Nucleic Acids Res	10.1093/nar/gkn168	2008
Phylogeny	Diversity and abundance of uncultured cytophaga-like bacteria in the Delaware estuary.	Kirchman DL, Yu L, Cottrell MT.	Appl Environ Microbiol	10.1128/aem.69.11.6587-6596.2003	2003
Metabolism	Structure of chlorosomes from the green filamentous bacterium Chloroflexus aurantiacus.	Psencik J, Collins AM, Liljeroos L, Torkkeli M, Laurinmaki P, Ansink HM, Ikonen TP, Serimaa RE, Blankenship RE, Tuma R, Butcher SJ.	J Bacteriol	10.1128/jb.00690-09	2009
Phylogeny	Analysis of diversity and activity of sulfate-reducing bacterial communities in sulfidogenic bioreactors using 16S rRNA and dsrB genes as molecular markers.	Dar SA, Yao L, van Dongen U, Kuenen JG, Muyzer G.	Appl Environ Microbiol	10.1128/aem.01875-06	2007
Phylogeny	The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences.	Gruber TM, Eisen JA, Gish K, Bryant DA.	FEMS Microbiol Lett	10.1111/j.1574-6968.1998.tb12978.x	1998
	Ecology of subglacial lake vostok (antarctica), based on metagenomic/metatranscriptomic analyses of accretion ice.	Rogers SO, Shtarkman YM, Kocer ZA, Edgar R, Veerapaneni R, D'Elia T.	Biology (Basel)	10.3390/biology2020629	2013
	Ecology and Physiology of the Competition for Light Between Chlorobium limicola and Chlorobium phaeobacteroides in Natural Habitats.	Montesinos E, Guerrero R, Abella C, Esteve I.	Appl Environ Microbiol	10.1128/aem.46.5.1007-1016.1983	1983
Transcriptome	GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent.	Wang F, Zhou H, Meng J, Peng X, Jiang L, Sun P, Zhang C, Van Nostrand JD, Deng Y, He Z, Wu L, Zhou J, Xiao X.	Proc Natl Acad Sci U S A	10.1073/pnas.0810418106	2009
Enzymology	Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes.	Biegel E, Schmidt S, Gonzalez JM, Muller V.	Cell Mol Life Sci	10.1007/s00018-010-0555-8	2011
Metabolism	Dynamics in the mixed microbial concourse.	Wintermute EH, Silver PA.	Genes Dev	10.1101/gad.1985210	2010
Metabolism	Both subunits of ATP-citrate lyase from Chlorobium tepidum contribute to catalytic activity.	Kim W, Tabita FR.	J Bacteriol	10.1128/jb.00523-06	2006
Metabolism	The genome of Rhodobacter sphaeroides strain 2.4.1 encodes functional cobinamide salvaging systems of archaeal and bacterial origins.	Gray MJ, Tavares NK, Escalante-Semerena JC.	Mol Microbiol	10.1111/j.1365-2958.2008.06437.x	2008
Metabolism	Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans.	Koechler S, Cleiss-Arnold J, Proux C, Sismeiro O, Dillies MA, Goulhen-Chollet F, Hommais F, Lievremont D, Arsene-Ploetze F, Coppee JY, Bertin PN.	BMC Microbiol	10.1186/1471-2180-10-53	2010
Metabolism	A soxA gene, encoding a diheme cytochrome c, and a sox locus, essential for sulfur oxidation in a new sulfur lithotrophic bacterium.	Mukhopadhyaya PN, Deb C, Lahiri C, Roy P.	J Bacteriol	10.1128/jb.182.15.4278-4287.2000	2000
	Second gene (nifH*) coding for a nitrogenase iron protein in Azotobacter chroococcum is adjacent to a gene coding for a ferredoxin-like protein.	Robson R, Woodley P, Jones R.	EMBO J	10.1002/j.1460-2075.1986.tb04341.x	1986
Phylogeny	The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.	Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.	BMC Genomics	10.1186/1471-2164-11-490	2010
Metabolism	Outer membrane proteins of Fibrobacter succinogenes with potential roles in adhesion to cellulose and in cellulose digestion.	Jun HS, Qi M, Gong J, Egbosimba EE, Forsberg CW.	J Bacteriol	10.1128/jb.00560-07	2007
Metabolism	Stable carbon isotope ratios of lipid biomarkers of sulfate-reducing bacteria.	Londry KL, Jahnke LL, Des Marais DJ.	Appl Environ Microbiol	10.1128/aem.70.2.745-751.2004	2004
Enzymology	Molecular characterization of the diversity and distribution of a thermal spring microbial community by using rRNA and metabolic genes.	Hall JR, Mitchell KR, Jackson-Weaver O, Kooser AS, Cron BR, Crossey LJ, Takacs-Vesbach CD.	Appl Environ Microbiol	10.1128/aem.00233-08	2008
Metabolism	Evidence for autotrophy via the reverse tricarboxylic acid cycle in the marine magnetotactic coccus strain MC-1.	Williams TJ, Zhang CL, Scott JH, Bazylinski DA.	Appl Environ Microbiol	10.1128/aem.72.2.1322-1329.2006	2006
	The amino acid sequences of the cytochromes c-555 from two green sulphur bacteria of the genus Chlorobium.	Van Beeumen J, Ambler RP, Meyer TE, Kamen MO, Olson JM, Shaw EK.	Biochem J	10.1042/bj1590757	1976
Metabolism	Cytochrome complex essential for photosynthetic oxidation of both thiosulfate and sulfide in Rhodovulum sulfidophilum.	Appia-Ayme C, Little PJ, Matsumoto Y, Leech AP, Berks BC.	J Bacteriol	10.1128/jb.183.20.6107-6118.2001	2001
	Nonspecific adherence by Actinobacillus actinomycetemcomitans requires genes widespread in bacteria and archaea.	Kachlany SC, Planet PJ, Bhattacharjee MK, Kollia E, DeSalle R, Fine DH, Figurski DH.	J Bacteriol	10.1128/jb.182.21.6169-6176.2000	2000
	Tracking molecular evolution of photosynthesis by characterization of a major photosynthesis gene cluster from Heliobacillus mobilis.	Xiong J, Inoue K, Bauer CE.	Proc Natl Acad Sci U S A	10.1073/pnas.95.25.14851	1998
Phylogeny	Genome-Based Taxonomic Classification of Bacteroidetes.	Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M.	Front Microbiol	10.3389/fmicb.2016.02003	2016
Metabolism	Chlorobium tepidum mutant lacking bacteriochlorophyll c made by inactivation of the bchK gene, encoding bacteriochlorophyll c synthase.	Frigaard NU, Voigt GD, Bryant DA.	J Bacteriol	10.1128/jb.184.12.3368-3376.2002	2002
Metabolism	Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.	Valdes J, Pedroso I, Quatrini R, Dodson RJ, Tettelin H, Blake R, Eisen JA, Holmes DS.	BMC Genomics	10.1186/1471-2164-9-597	2008
	Sequence and organization of pXO1, the large Bacillus anthracis plasmid harboring the anthrax toxin genes.	Okinaka RT, Cloud K, Hampton O, Hoffmaster AR, Hill KK, Keim P, Koehler TM, Lamke G, Kumano S, Mahillon J, Manter D, Martinez Y, Ricke D, Svensson R, Jackson PJ.	J Bacteriol	10.1128/jb.181.20.6509-6515.1999	1999
Metabolism	Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota.	Hallam SJ, Mincer TJ, Schleper C, Preston CM, Roberts K, Richardson PM, DeLong EF.	PLoS Biol	10.1371/journal.pbio.0040095	2006
	The bchU gene of Chlorobium tepidum encodes the c-20 methyltransferase in bacteriochlorophyll c biosynthesis.	Maresca JA, Gomez Maqueo Chew A, Ponsati MR, Frigaard NU, Ormerod JG, Bryant DA.	J Bacteriol	10.1128/jb.186.9.2558-2566.2004	2004
	Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17.	Rother D, Henrich HJ, Quentmeier A, Bardischewsky F, Friedrich CG.	J Bacteriol	10.1128/jb.183.15.4499-4508.2001	2001
Phylogeny	Characterization and in situ carbon metabolism of phototrophic consortia.	Glaeser J, Overmann J.	Appl Environ Microbiol	10.1128/aem.69.7.3739-3750.2003	2003
Phylogeny	Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis.	Casamayor EO, Schafer H, Baneras L, Pedros-Alio C, Muyzer G.	Appl Environ Microbiol	10.1128/aem.66.2.499-508.2000	2000
Enzymology	Sequence analysis of the cryptic plasmid pMG101 from Rhodopseudomonas palustris and construction of stable cloning vectors.	Inui M, Roh JH, Zahn K, Yukawa H.	Appl Environ Microbiol	10.1128/aem.66.1.54-63.2000	2000
	Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen.	Liu N, Kivenson V, Peng X, Cui Z, Lankiewicz TS, Gosselin KM, English CJ, Blair EM, O'Malley MA, Valentine DL.	Appl Environ Microbiol	10.1128/aem.00914-23	2024
Metabolism	Thioalkalicoccus limnaeus gen. nov., sp. nov., a new alkaliphilic purple sulfur bacterium with bacteriochlorophyll b.	Bryantseva IA, Gorlenko VM, Kompantseva EI, Imhoff JF.	Int J Syst Evol Microbiol	10.1099/00207713-50-6-2157	2000
	Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16^T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.	Luedin SM, Pothier JF, Danza F, Storelli N, Frigaard NU, Wittwer M, Tonolla M.	Stand Genomic Sci	10.1186/s40793-018-0317-z	2018
Phylogeny	Chlorobium ferrooxidans sp. nov., a phototrophic green sulfur bacterium that oxidizes ferrous iron in coculture with a "Geospirillum" sp. strain.	Heising S, Richter L, Ludwig W, Schink B.	Arch Microbiol	10.1007/s002030050748	1999

References

#86	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 245
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chlorobium limicola (DSM 245, NBRC 103803, 6330)

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