Flavobacterium thermophilum (DSM 19814, BKM 1325, CCM 3496)

Name: Flavobacterium thermophilum (DSM 19814, BKM 1325, CCM 3496)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24019

Type strain

Strain Designation G-21

Culture col. no. DSM 19814 BKM 1325 CCM 3496 CCUG 22402 NCTC 11526 2 more

NCBI tax ID(s) 1414643

Special Collections DSMZ CCUG

Links

Flavobacterium thermophilum G-21 is an aerobe, thermophilic prokaryote that was isolated from hot spring.

aerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 54009

CCUG 61461T,CCUG 22402,NCTC 11526,CCM 3496,DSM 19814

@ref 20215

Last LPSN update 2025-12-16 09:52:46

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium thermophilum

Full scientific name Flavobacterium thermophilum Loginova and Egorova 1982

Morphology

Colony morphology

47634

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20567	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)		Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20567	positive	growth	45	thermophilic
47634	positive	growth	42-56	thermophilic

Physiology and metabolism

Oxygen tolerance

47634

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125438		91.987

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20567	hot spring	Kazakhstan, near Alma-Ata
47634	Hot spring	near Alma-Ata	Kazakhstan	KAZ	Asia

Taxonmaps

69479

Global distribution of 16S sequence HF558369 (>99% sequence identity) for Anoxybacillus from Microbeatlas

Aquatic Samples	335
Soil Samples	183
Animal Samples	1423
Plant Samples	87
Total Samples	2028

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20567	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	51354_H01 assembly for [Flavobacterium] thermophilum NCTC11526	contig	GCA_900450595	1414643.3	2831987924	1414643	50.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20567	[Flavobacterium] thermophilum partial 16S rRNA gene, type strain CCUG 22402T	HF558369	1529		1414643

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: [Flavobacterium] thermophilum NCTC11526
NCBI: GCA_900450595

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	82.50	no
125439	motility	BacteriaNetⓘ	yes	79.60	no
125439	gram_stain	BacteriaNetⓘ	variable	87.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	64.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: [Flavobacterium] thermophilum strain NCTC11526
PATRIC: 1414643.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.11	no
125438	anaerobic	anaerobicⓘ	no	95.96	yes
125438	spore-forming	spore-formingⓘ	yes	91.99	no
125438	aerobic	aerobicⓘ	yes	82.25	yes
125438	thermophilic	thermophileⓘ	yes	66.17	no
125438	flagellated	motile2+ⓘ	yes	83.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bacterial diversity in 110 thermal hot springs of Indian Himalayan Region (IHR).	Verma J, Sourirajan A, Dev K.	3 Biotech	10.1007/s13205-022-03270-8	2022
	Microbial diversity in the vaginal microbiota and its link to pregnancy outcomes.	Baud A, Hillion KH, Plainvert C, Tessier V, Tazi A, Mandelbrot L, Poyart C, Kennedy SP.	Sci Rep	10.1038/s41598-023-36126-z	2023
	Analyses of competent and non-competent subpopulations of Bacillus subtilis reveal yhfW, yhxC and ncRNAs as novel players in competence.	Boonstra M, Schaffer M, Sousa J, Morawska L, Holsappel S, Hildebrandt P, Sappa PK, Rath H, de Jong A, Lalk M, Mader U, Volker U, Kuipers OP.	Environ Microbiol	10.1111/1462-2920.15005	2020
Phylogeny	A comparative analysis of extreme thermophilic bacteria belonging to the genus Thermus.	Degryse E, Glansdorff N, Pierard A.	Arch Microbiol	10.1007/bf00402307	1978

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20567	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19814
#47634	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 22402
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium thermophilum (DSM 19814, BKM 1325, CCM 3496)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900450595

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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