Name: Limibacter armeniacum YM11-185
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24013

Type strain:

Species: Limibacter armeniacum

Strain Designation: YM11-185

Culture col. no.: DSM 26026, KCTC 22132, MBIC 08286

Strain history: <- JW Yoon, Tokyo Univ., Japan

NCBI tax ID(s): 466084 (species)

SI-ID 405754

DSM 26026

Section

Limibacter armeniacum YM11-185 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from shore sediment sample.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Flammeovirgaceae*
	Genus	*Limibacter*
	Species	**Limibacter armeniacum**
	Full Scientific Name (LPSN)	Limibacter armeniacum Yoon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32507]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #32507]	Cell length	27.5 µm

[Ref.: #32507]	Cell width	0.4 µm

[Ref.: #32507]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32507]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #32507]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #32507]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21184]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21184]

Culture medium growth

[Ref.: #21184]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21184]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21184]	growth	28 °C
[Ref.: #32507]	growth	17-37 °C
[Ref.: #32507]	optimum	28.5 °C
[Ref.: #67771]	growth	27-30 °C

[Ref.: #21184]	Temperature range	mesophilic
[Ref.: #32507]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32507]			optimum	7
[Ref.: #32507]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32507]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32507]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32507]		NaCl		growth	0-6.5	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32507]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #32507]	arabinose ChEBI	+	carbon source
[Ref.: #32507]	cellobiose ChEBI	+	carbon source
[Ref.: #32507]	dextrin ChEBI	+	carbon source
[Ref.: #32507]	galactose ChEBI	+	carbon source
[Ref.: #32507]	glycogen ChEBI	+	carbon source
[Ref.: #32507]	lactose ChEBI	+	carbon source
[Ref.: #32507]	maltose ChEBI	+	carbon source
[Ref.: #32507]	mannose ChEBI	+	carbon source
[Ref.: #32507]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32507]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32507]	acid phosphatase	+	3.1.3.2
[Ref.: #32507]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32507]	catalase	+	1.11.1.6
[Ref.: #32507]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32507]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21184]	Sample type/isolated from	shore sediment sample
[Ref.: #21184]	Geographic location (country and/or sea, region)	Carp Island (07° 05' 22.9'' N 134° 16' 46.4'' E)
[Ref.: #21184]	Country	Palau
[Ref.: #21184]	Country ISO 3 Code	PLW
[Ref.: #21184]	Continent	Australia and Oceania

[Ref.: #67771]	Sample type/isolated from	From marine sediment
[Ref.: #67771]	Country	Palau
[Ref.: #67771]	Country ISO 3 Code	PLW
[Ref.: #67771]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB359907 (>99% sequence identity) for Limibacter armeniacum subclade from Microbeatlas

Aquatic Samples	55
Soil Samples	46
Animal Samples	3
Plant Samples	2
Total Samples	106

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21184]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21184]	Limibacter armeniacum gene for 16S rRNA, partial sequence, strain: YM11-185	AB359907	1467	ENA	466084 tax ID

[Ref.: #21184]	GC-content	27.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32507]	GC-content	27.8-27.9 mol%
[Ref.: #67771]	GC-content	27.9 mol%

Availability in culture collections External links

[Ref.: #21184]

Culture collection no.

DSM 26026, KCTC 22132, MBIC 08286

[Ref.: #87987]

SI-ID 405754

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Limibacter armeniacum gen. nov., sp. nov., a novel representative of the family 'Flammeovirgaceae' isolated from marine sediment.	Yoon J, Matsuo Y, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65595-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21184

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26026

#32507

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28727 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87987

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405754.1 )

#28727

IJSEM 982 2008 ( DOI 10.1099/ijs.0.65595-0 , PubMed 18398206 )

* These data were automatically processed and therefore are not curated

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