Name: Cronobacter condimenti 1330
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23990

Type strain:

Species: Cronobacter condimenti

Strain Designation: 1330

Culture col. no.: DSM 27966, CECT 7863, LMG 26250

Strain history: <- LMG <- M. J. Figueras, Rovira i Virgili University, Reus, Spain <- S. J. Forsythe, Nottingham Trent University <- I. Turcovsky

NCBI tax ID(s): 1073999 (strain), 1163710 (species)

SI-ID 375112

LMG 26250, CECT 7863, DSM 27966, CCUG 76579

Section

Cronobacter condimenti 1330 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from spiced meat.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Cronobacter*
	Species	**Cronobacter condimenti**
	Full Scientific Name (LPSN)	Cronobacter condimenti Joseph et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30278]	Gram stain	negative
[Ref.: #30278]	Cell shape	rod-shaped
[Ref.: #30278]	Motility	no

[Ref.: #69480]	Gram stain	negative Confidence in %99.908

[Ref.: #69480]	Motility	yes Confidence in %95.76

[Ref.: #30278]

Pigment production

yes

Multimedia content

[Ref.: #21153]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21153]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #21153]

Culture medium growth

[Ref.: #21153]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21153]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21153]			growth	37 °C
[Ref.: #30278]			optimum	37 °C

[Ref.: #21153]	Temperature range	mesophilic
[Ref.: #30278]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30278]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.603

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #30278]	citrate ChEBI	+	carbon source
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #30278]	malonate ChEBI	+	carbon source
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #30278]	nitrate ChEBI	+	reduction
[Ref.: #30278]	ornithine ChEBI	+	carbon source
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #30278]	indole ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #30278]	indole ChEBI		+
[Ref.: #68368]	acetoin ChEBI	+		* from API 20E
[Ref.: #68368]	indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #30278]	catalase	+	1.11.1.6
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #30278]	gelatinase	+
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #21153]	16872	+	+	-	+	+	-	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #21153]	16767	+	+	-	+	+	-	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21153]	Sample type/isolated from	spiced meat
[Ref.: #21153]	Country	Slovakia
[Ref.: #21153]	Country ISO 3 Code	SVK
[Ref.: #21153]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Meat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21153]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21153]	Cronobacter condimenti 1330 partial 16S rRNA gene, type strain 1330	FN539031	1413	ENA	1073999 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cronobacter condimenti 1330 LMG 26250	GCA_001277255	complete	GenBank	1073999 tax ID	*
[Ref.: #66792]	Cronobacter condimenti 1330	GCA_000319285	contig	GenBank	1073999 tax ID	*
[Ref.: #66792]	Cronobacter condimenti 1330	1073999.4	wgs	PATRIC	1073999 tax ID	*
[Ref.: #66792]	Cronobacter condimenti 1330 strain LMG 26250	1073999.11	plasmid	PATRIC	1073999 tax ID	*
[Ref.: #66792]	Cronobacter condimenti 1330 strain LMG 26250	1073999.7	complete	PATRIC	1073999 tax ID	*
[Ref.: #66792]	Cronobacter condimenti 1330	2534681767	draft	JGI IMG/M	1073999 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cronobacter condimenti 1330 LMG 26250 NCBI: GCA_001277255.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cronobacter condimenti 1330 LMG 26250 NCBI: GCA_001277255.1
[Ref.: #69480]	motile	yes	91.763	no
[Ref.: #69480]	flagellated	no	81.327	yes
[Ref.: #69480]	gram-positive	no	97.885	yes
[Ref.: #69480]	anaerobic	no	96.247	no
[Ref.: #69480]	halophile	no	76.833	no
[Ref.: #69480]	spore-forming	no	93.611	yes
[Ref.: #69480]	thermophile	no	99.31	yes
[Ref.: #69480]	glucose-util	yes	96.097	no
[Ref.: #69480]	aerobic	yes	77.946	no
[Ref.: #69480]	glucose-ferment	yes	92.371	yes

Availability in culture collections External links

[Ref.: #21153]

Culture collection no.

DSM 27966, CECT 7863, LMG 26250

[Ref.: #87965]

SI-ID 375112

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mangrovibacter phragmitis sp. nov., an endophyte isolated from the roots of Phragmites karka.	Behera P, Venkata Ramana V, Maharana B, Joseph N, Vaishampayan P, Singh NK, Shouche Y, Bhadury P, Mishra SR, Raina V, Suar M, Pattnaik AK, Rastogi G	Int J Syst Evol Microbiol	10.1099/ijsem.0.001789	2017	*
Phylogeny	Cronobacter condimenti sp. nov., isolated from spiced meat, and Cronobacter universalis sp. nov., a species designation for Cronobacter sp. genomospecies 1, recovered from a leg infection, water and food ingredients.	Joseph S, Cetinkaya E, Drahovska H, Levican A, Figueras MJ, Forsythe SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.032292-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21153

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27966

#30278

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26619 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87965

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID375112.1 )

#26619

IJSEM 1277 2012 ( DOI 10.1099/ijs.0.032292-0 , PubMed 22661070 )

* These data were automatically processed and therefore are not curated

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Cronobacter condimenti 1330 LMG 26250

Cronobacter condimenti 1330 LMG 26250

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