Name: Xenorhabdus khoisanae 106-C
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23971

Type strain:

Species: Xenorhabdus khoisanae

Strain Designation: 106-C, SF106-C

Culture col. no.: DSM 26373

Strain history: <- C. A. Van Reenen, Dept. Microbiology, Stellenbosch Univ., South Africa; SF106-C <- T. Ferreira, Department of Conservation Ecology and Entomology, University of Stellenbosch

NCBI tax ID(s): 880157 (species)

SI-ID 400579

DSM 26373

Other strains from Xenorhabdus khoisanae

X. khoisanae SF87, DSM 25463, ATCC BAA-2406, ... (type strain)
X. khoisanae SF362, DSM 26374
X. khoisanae SF80, DSM 26378

Section

Xenorhabdus khoisanae 106-C is a mesophilic animal pathogen that was isolated from entomopathogenic nematode Steinernema khoisanae.

animal pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Xenorhabdus*
	Species	**Xenorhabdus khoisanae**
	Full Scientific Name (LPSN)	Xenorhabdus khoisanae Ferreira et al. 2013

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #20911]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20911]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20911]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #20911]	25380	-	+	+	+	+	+	+	-	+	-	+	-	+	+	+	-	+/-	+	+	+/-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20911]	Sample type/isolated from	entomopathogenic nematode Steinernema khoisanae
[Ref.: #20911]	Host species	Steinernema khoisanae
[Ref.: #20911]	Geographic location (country and/or sea, region)	Western Cape Prov.
[Ref.: #20911]	Country	South Africa
[Ref.: #20911]	Country ISO 3 Code	ZAF
[Ref.: #20911]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Nematoda

What are isolation sources categories?

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Global distribution of 16S sequence JX623972 (>99% sequence identity) for Xenorhabdus from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples	4
Plant Samples
Total Samples	5

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20911]	Pathogenicity (animal)	yes
[Ref.: #20911]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20911]	Xenorhabdus khoisanae strain 106-C 16S ribosomal RNA gene, partial sequence	JX623972	1524	ENA	880157 tax ID

Availability in culture collections External links

[Ref.: #20911]

Culture collection no.

DSM 26373

[Ref.: #87952]

SI-ID 400579

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Xenorhabdus khoisanae sp. nov., the symbiont of the entomopathogenic nematode Steinernema khoisanae.	Ferreira T, van Reenen CA, Endo A, Sproer C, Malan AP, Dicks LMT	Int J Syst Evol Microbiol	10.1099/ijs.0.049049-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20911

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26373

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87952

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400579.1 )

* These data were automatically processed and therefore are not curated

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