Dickeya solani DSM 28711 is a plant pathogen that was isolated from potato plant showing symptoms of blackleg and slow wilt.
plant pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Pectobacteriaceae |
| Genus Dickeya |
| Species Dickeya solani |
| Full scientific name Dickeya solani van der Wolf et al. 2014 |
| @ref | Gram stain | Confidence | |
|---|---|---|---|
| 125439 | negative | 99.056 |
| @ref: | 20529 |
| multimedia content: | DSM_28711.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_28711.jpg |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref: | 20529 |
| multimedia content: | DSM_28711.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_28711.jpg |
| caption: | DSM 28711 on medium 535 at 28 °C |
| intellectual property rights: | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 20529 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 20529 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | Medium recipe at MediaDive | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 20529 | positive | growth | 25 |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.664 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17632 ChEBI | nitrate | - | reduction | from API 20E |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68368 | gelatinase | + | from API 20E | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20529 | + | - | - | - | + | - | - | - | + | - | + | + | + | - | - | + | + | + | + | + | - | - | + | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 20529 | + | - | - | - | + | - | - | - | + | + | + | + | + | + | - | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 20529 | + | - | - | - | + | - | - | - | + | + | + | + | + | + | - | + | + | + | + | + | + | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Infection | #Disease | - | |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| @ref | Sample type | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|
| 20529 | potato plant (Melody) showing symptoms of blackleg and slow wilt | Netherlands | NLD | Europe |
Global distribution of 16S sequence KF639914 (>99% sequence identity) for Dickeya solani from Microbeatlas ![]()
| @ref | Pathogenicity plant | Biosafety level | Biosafety level comment | |
|---|---|---|---|---|
| 20529 | 1 | Risk group (German classification) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Highly Targeted Detection of Priority Phytopathogen Pectobacterium brasiliense: From Obtaining Polyclonal Antibodies to Development and Approbation of Enzyme-Linked Immunoassay and Lateral Flow Immunoassay. | Safenkova IV, Galushka PA, Varitsev YA, Kamionskaya MV, Drenova NV, Vasilyeva AA, Zherdev AV, Uskov AI, Dzantiev BB. | Microorganisms | 10.3390/microorganisms12122436 | 2024 | ||
| Unlocking the Potential of 46 New Bacteriophages for Biocontrol of Dickeya Solani. | Carstens AB, Djurhuus AM, Kot W, Jacobs-Sera D, Hatfull GF, Hansen LH. | Viruses | 10.3390/v10110621 | 2018 | ||
| The Great Five-an artificial bacterial consortium with antagonistic activity towards Pectobacterium spp. and Dickeya spp.: formulation, shelf life, and the ability to prevent soft rot of potato in storage. | Maciag T, Krzyzanowska DM, Jafra S, Siwinska J, Czajkowski R. | Appl Microbiol Biotechnol | 10.1007/s00253-020-10550-x | 2020 | ||
| A natural single nucleotide mutation in the small regulatory RNA ArcZ of Dickeya solani switches off the antimicrobial activities against yeast and bacteria. | Brual T, Effantin G, Baltenneck J, Attaiech L, Grosbois C, Royer M, Cigna J, Faure D, Hugouvieux-Cotte-Pattat N, Gueguen E. | PLoS Genet | 10.1371/journal.pgen.1010725 | 2023 | ||
| Sequential interspecies interactions affect production of antimicrobial secondary metabolites in Pseudomonas protegens DTU9.1. | Hansen ML, Wibowo M, Jarmusch SA, Larsen TO, Jelsbak L. | ISME J | 10.1038/s41396-022-01322-8 | 2022 | ||
| Phylogeny | Species of Dickeya and Pectobacterium Isolated during an Outbreak of Blackleg and Soft Rot of Potato in Northeastern and North Central United States. | Curland RD, Mainello A, Perry KL, Hao J, Charkowski AO, Bull CT, McNally RR, Johnson SB, Rosenzweig N, Secor GA, Larkin RP, Gugino BK, Ishimaru CA. | Microorganisms | 10.3390/microorganisms9081733 | 2021 | |
| Antagonistic Interactions Between Dickeya solani and Bacillus subtilis. | Gatta R, Iwanicki A, Czajkowski R, Obuchowski M. | Int J Mol Sci | 10.3390/ijms26157193 | 2025 | ||
| Acetylcholine chemotaxis in global bacterial plant pathogens. | Gavira JA, Gilabert MJ, Santamaria-Hernando S, Molina-Ollero A, Rico-Jimenez M, Cabrera JJ, Lopez-Solanilla E, Matilla MA. | Microbiol Res | 10.1016/j.micres.2025.128294 | 2025 | ||
| Antagonistic Interactions Between Dickeya solani and Bacillus subtilis | Gatta R, Iwanicki A, Czajkowski R, Obuchowski M. | Int J Mol Sci | 2025 | |||
| Survey of Soft Rot Pectobacteriaceae Infecting Potatoes in South Africa | Theron E, Bophela KN, Bisschoff J, Shin G, Coutinho TA, van der Waals JE. | Potato research. | 10.1007/s11540-022-09598-1 | 2024 | ||
| Gene expression analyses on Dickeya solani strains of diverse virulence levels unveil important pathogenicity factors for this species. | Babinska-Wensierska W, Motyka-Pomagruk A, Mengoni A, diCenzo GC, Lojkowska E. | Sci Rep | 10.1038/s41598-025-98321-4 | 2025 | ||
| Genotypic and phenotypic uniformity among the population of Pectobacterium atrosepticum strains isolated during three growing seasons from potato fields in Poland | Sledz W, Motyka-Pomagruk A, Zukowska D, Babinska-Wensierska W, Zoledowska S, Lojkowska E. | Eur J Plant Pathol | 10.1007/s10658-023-02687-y | 2024 | ||
| Pathogenicity | Genetic Loci of Plant Pathogenic Dickeya solani IPO 2222 Expressed in Contact with Weed-Host Bittersweet Nightshade (Solanum dulcamara L.) Plants. | Czajkowski R, Krzyzanowska DM, Sokolova D, Rabalski L, Kosinski M, Jafra S, Krolicka A. | Int J Mol Sci | 10.3390/ijms25052794 | 2024 | |
| Combining recombinase polymerase amplification with tyrosine modified 2'-deoxyuridine-5'-triphosphate for direct voltammetric detection of double-stranded DNA: Application to potato pathogen Dickeya solani. | Suprun EV, Khmeleva SA, Duskaev IF, Ptitsyn KG, Kurbatov LK, Shershov VE, Kuznetsova VE, Lapa SA, Chudinov AV, Radko SP. | Talanta | 10.1016/j.talanta.2024.125841 | 2024 | ||
| Lesson from the emergence, spread and decline of Dickeya solani, the virulent potato blackleg and soft rot bacterial pathogen in Finland | Degefu Y. | Journal of phytopathology. | 2024 | |||
| An iron fist in a velvet glove: The cooperation of a novel pyoverdine from Pseudomonas donghuensis P482 with 7-hydroxytropolone is pivotal for its antibacterial activity. | Jafra S, Jablonska M, Maciag T, Matuszewska M, Borowicz M, Prusinski M, Zmudzinska W, Thiel M, Czaplewska P, Krzyzanowska DM, Czajkowski R. | Environ Microbiol | 10.1111/1462-2920.16559 | 2024 | ||
| Development and validation of genome-informed and multigene-based qPCR and LAMP assays for accurate detection of Dickeya solani: a critical quarantine pathogen threatening the potato industry. | Dobhal S, Santillana G, Stulberg MJ, Arizala D, Alvarez AM, Arif M. | Microbiol Spectr | 10.1128/spectrum.00784-24 | 2025 | ||
| Genome characterization of Dickeya solani bacteriophage W2B. | Balasubramaniam HM, Tze Yan F, Michelle JiaMin L, Parimannan S, Mutusamy P, Jaya Jothi S, Rajandas H. | Microbiol Resour Announc | 10.1128/mra.00452-23 | 2023 | ||
| Lipids | Pectobacterium atrosepticum SCRI1043 flagella mediate adherence to potato plants indirectly through motility. | Holmes A, Humphris S, Marshall J, Rossez Y, Toth I, Holden NJ. | Microbiology (Reading) | 10.1099/mic.0.001588 | 2025 | |
| Gut viral metagenomics identifies viral signatures and their role in depression. | Chen X, Wu J, Fan D, Zhang P, Li Y, Cao Y, Cao M. | Front Microbiol | 10.3389/fmicb.2025.1573851 | 2025 | ||
| Genetics | High-Quality Complete Genome Resource of Plant-Pathogenic Bacterium Dickeya solani IPO 2019, Isolated from Hyacinthus orientalis. | Czajkowski R, Rabalski L, Bartnik P, Jafra S. | Mol Plant Microbe Interact | 10.1094/mpmi-03-21-0050-a | 2021 | |
| Enzymology | A Lrp/AsnC Family Transcriptional Regulator Lrp Is Essential for the Pathogenicity of Dickeya oryzae. | Wu X, Chen Q, Liu H, Gu W, Deng Y, Zhang LH, Liang Z. | Mol Plant Pathol | 10.1111/mpp.70100 | 2025 | |
| Diploid Potato Germplasm with Resistance to Dickeya solani | Lebecka R, Wasilewicz-Flis I, Mankowski D. | Potato research. | 10.1007/s11540-020-09482-w | 2021 | ||
| QTLs for potato tuber resistance to Dickeya solani are located on chromosomes II and IV | Lebecka R, Sliwka J, Grupa-Urbanska A, Szajko K, Marczewski W. | Plant Pathol | 2021 | |||
| Bacteriophages as Agents for Plant Disease Control: Where Are We After a Century? | Choudhary M, Bankole I, McDuffee S, Parajuli A, Poudel M, Balogh B, Paret M, Jones J. | Viruses | 2025 | |||
| Genetics | Clonality and Diversity in the Soft Rot Dickeya solani Phytopathogen. | Van Gijsegem F, Portier P, Taghouti G, Pedron J. | Int J Mol Sci | 10.3390/ijms242417553 | 2023 | |
| Nano-metals forming bacteria in Egypt. II. Efficacy towards biomolecules, ultrastructure, growth parameters, and eco-friendly therapeutic of soft rot/blackleg genera. | Shoeib AA, Ashmawy NA, Kamal A, Zaki SAEF. | Microb Cell Fact | 10.1186/s12934-023-02101-6 | 2023 | ||
| Removal of bacterial plant pathogens in columns filled with quartz and natural sediments under anoxic and oxygenated conditions. | Eisfeld C, Schijven JF, van der Wolf JM, Medema G, Kruisdijk E, van Breukelen BM. | Water Res | 10.1016/j.watres.2022.118724 | 2022 | ||
| Enzymology | Diversity of limestone bacteriophages infecting Dickeya solani isolated in the Czech Republic. | Petrzik K, Vacek J, Brazdova S, Sevcik R, Koloniuk I. | Arch Virol | 10.1007/s00705-020-04926-7 | 2021 | |
| Svx Peptidases of Phytopathogenic Pectolytic Bacteria: Structural, Catalytic and Phytoimmune Properties. | Tendiuk N, Diakonova A, Petrova O, Mukhametzyanov T, Makshakova O, Gorshkov V. | Int J Mol Sci | 10.3390/ijms25020756 | 2024 | ||
| Pseudomonas PA14H7: Identification and Quantification of the 7-Hydroxytropolone Iron Complex as an Active Metabolite against Dickeya, the Causal Agent of Blackleg on the Potato Plant. | Munier-Lepinay E, Mathiron D, Quero A, Khelifa M, Laclef S, Pilard S. | Molecules | 10.3390/molecules28176207 | 2023 | ||
| The occurrence of bacteria from different species of Pectobacteriaceae on seed potato plantations in Poland | Motyka-Pomagruk A, Zoledowska S, Sledz W, Lojkowska E. | Eur J Plant Pathol | 10.1007/s10658-020-02163-x | 2021 | ||
| Dissimilar gene repertoires of Dickeya solani involved in the colonization of lesions and roots of Solanum tuberosum. | Robic K, Munier E, Effantin G, Lachat J, Naquin D, Gueguen E, Faure D. | Front Plant Sci | 10.3389/fpls.2023.1154110 | 2023 | ||
| Genetics | Comparative genomics and pangenome-oriented studies reveal high homogeneity of the agronomically relevant enterobacterial plant pathogen Dickeya solani. | Motyka-Pomagruk A, Zoledowska S, Misztak AE, Sledz W, Mengoni A, Lojkowska E. | BMC Genomics | 10.1186/s12864-020-06863-w | 2020 | |
| Genetics | Pattern and causes of the establishment of the invasive bacterial potato pathogen Dickeya solani and of the maintenance of the resident pathogen D. dianthicola. | Blin P, Robic K, Khayi S, Cigna J, Munier E, Dewaegeneire P, Laurent A, Jaszczyszyn Y, Hong KW, Chan KG, Beury A, Reverchon S, Giraud T, Helias V, Faure D. | Mol Ecol | 10.1111/mec.15751 | 2021 | |
| Genetics | Patterns of Genomic Variations in the Plant Pathogen Dickeya solani. | Khayi S, Chan KG, Faure D. | Microorganisms | 10.3390/microorganisms10112254 | 2022 | |
| Pathogenicity | Unveiling Host Interactions and Evolutionary Constraints of a Novel Bacteriophage Infecting Xanthomonas hortorum pv. vitians. | Baud A, Moriniere L, Idrissi IE, Clavijo-Coppens F, Lacroix E, Taveau N, Costechareyre D, Bertolla F. | Environ Microbiol Rep | 10.1111/1758-2229.70171 | 2025 | |
| Metabolism | Development of lateral flow assay combined with recombinase polymerase amplification for highly sensitive detection of Dickeya solani. | Ivanov AV, Safenkova IV, Drenova NV, Zherdev AV, Dzantiev BB. | Mol Cell Probes | 10.1016/j.mcp.2020.101622 | 2020 | |
| Genetics | PacBio-Based Protocol for Bacterial Genome Assembly. | Motyka-Pomagruk A, Zoledowska S, Kabza M, Lojkowska E. | Methods Mol Biol | 10.1007/978-1-0716-1099-2_1 | 2021 | |
| Comparative Bioactivity Evaluation of Chemically Characterized Essential Oils Obtained from Different Aerial Parts of Eucalyptus gunnii Hook. f. (Myrtaceae). | Abbaci H, Nabti EH, Al-Bekairi AM, Hagras SAA, Salem-Bekhit MM, Adjaoud A, Alzahrani HA, Bensidhoum L, Alenazy R, Piras A, Falconieri D, Porcedda S, Benguerba Y, Houali K. | Molecules | 10.3390/molecules28062638 | 2023 | ||
| Transcriptome analysis unravels the biocontrol mechanism of Serratia plymuthica A30 against potato soft rot caused by Dickeya solani. | Hadizadeh I, Peivastegan B, Nielsen KL, Auvinen P, Sipari N, Pirhonen M. | PLoS One | 10.1371/journal.pone.0308744 | 2024 | ||
| Effects of stressful physico-chemical factors on the fitness of the plant pathogenic bacterium Dickeya solani | Przepiora T, Figaj D, Radzinska M, Apanowicz (Bukrejewska) M, Sieradzka M, Ambroziak P, Hugouvieux-Cotte-Pattat N, Lojkowska E, Skorko-Glonek J. | Eur J Plant Pathol | 10.1007/s10658-019-01902-z | 2020 | ||
| Genetics | Comparative Genomics, from the Annotated Genome to Valuable Biological Information: A Case Study. | Zoledowska S, Motyka-Pomagruk A, Misztak A, Lojkowska E. | Methods Mol Biol | 10.1007/978-1-0716-1099-2_7 | 2021 | |
| Pathogenicity | Influence of glucose on swarming and quorum sensing of Dickeya solani. | Gatta R, Wiese A, Iwanicki A, Obuchowski M. | PLoS One | 10.1371/journal.pone.0263124 | 2022 | |
| Phenotype | The metabolic shift in highly and weakly virulent Dickeya solani strains is more affected by temperature than by mutations in genes encoding global virulence regulators. | Potrykus M, Decorosi F, Perkowska I, Viti C, Mengoni A, Hugouvieux-Cotte-Pattat N, Lojkowska E. | FEMS Microbiol Ecol | 10.1093/femsec/fiaa023 | 2020 | |
| Gene expression and phytohormone levels in the asymptomatic and symptomatic phases of infection in potato tubers inoculated with Dickeya solani. | Hadizadeh I, Peivastegan B, Wang J, Sipari N, Nielsen KL, Pirhonen M. | PLoS One | 10.1371/journal.pone.0273481 | 2022 | ||
| Bacteriophages Biocontrol of Kiwifruit Bacterial Canker Caused by Pseudomonas syringae pv. actinidiae (Psa) in Two Seasons Under Field Conditions. | Sanhueza P, Riquelme N, Leon M, Morales JG, Prince C, Flores MF, Yanez C, Cuneo IF, Bastias R, Besoain X. | Antibiotics (Basel) | 10.3390/antibiotics14101023 | 2025 | ||
| Metabolism | Solanimycin: Biosynthesis and Distribution of a New Antifungal Antibiotic Regulated by Two Quorum-Sensing Systems. | Matilla MA, Monson RE, Murphy A, Schicketanz M, Rawlinson A, Duncan C, Mata J, Leeper F, Salmond GPC. | mBio | 10.1128/mbio.02472-22 | 2022 | |
| The structure of the O-polysaccharide isolated from pectinolytic gram-negative bacterium Dickeya aquatica IFB0154 is different from the O-polysaccharides of other Dickeya species. | Kowalczyk A, Szpakowska N, Sledz W, Motyka-Pomagruk A, Ossowska K, Lojkowska E, Kaczynski Z. | Carbohydr Res | 10.1016/j.carres.2020.108135 | 2020 | ||
| Comparison of Single-Stranded DNA Probes Conjugated with Magnetic Particles for Trans-Cleavage in Cas12a-Based Biosensors. | Ivanov AV, Safenkova IV, Zherdev AV, Wan Y, Dzantiev BB. | Biosensors (Basel) | 10.3390/bios13070700 | 2023 | ||
| Renewed insights into Ackermannviridae phage biology and applications. | Sorensen AN, Brondsted L. | Npj Viruses | 10.1038/s44298-024-00046-0 | 2024 | ||
| Productivity and Phytochemicals of Asclepias curassavica in Response to Compost and Silver Nanoparticles Application: HPLC Analysis and Antibacterial Activity of Extracts. | El-Hefny M, Mohamed AA, Abdelkhalek A, Salem MZM. | Plants (Basel) | 10.3390/plants12122274 | 2023 | ||
| Genetics | Lytic properties and genomic analysis of bacteriophage Brt_Psa3, targeting Pseudomonas syringae pv. actinidiae. | Gimranov E, Oliveira H, Santos C, Moura L, Azeredo J. | Appl Microbiol Biotechnol | 10.1007/s00253-025-13613-z | 2025 | |
| Field Use of Protective Bacteriophages against Pectinolytic Bacteria of Potato. | Petrzik K, Vacek J, Kmoch M, Binderova D, Brazdova S, Lenz O, Sevcik R. | Microorganisms | 10.3390/microorganisms11030620 | 2023 | ||
| Biological control of potato soft rot caused by Dickeya solani and the survival of bacterial antagonists under cold storage conditions | Hadizadeh I, Peivastegan B, Hannukkala A, Van der Wolf JM, Nissinen R, Pirhonen M. | Plant Pathol | 10.1111/ppa.12956 | 2019 | ||
| Potential of the quorum-quenching and plant-growth promoting halotolerant Bacillus toyonensis AA1EC1 as biocontrol agent. | Roca A, Cabeo M, Enguidanos C, Martinez-Checa F, Sampedro I, Llamas I. | Microb Biotechnol | 10.1111/1751-7915.14420 | 2024 | ||
| Dickeya Manipulates Multiple Quorum Sensing Systems to Control Virulence and Collective Behaviors. | Liu F, Hu M, Zhang Z, Xue Y, Chen S, Hu A, Zhang LH, Zhou J. | Front Plant Sci | 10.3389/fpls.2022.838125 | 2022 | ||
| Pathogenicity | A novel genus of Pectobacterium bacteriophages display broad host range by targeting several species of Danish soft rot isolates. | Pedersen JS, Carstens AB, Rothgard MM, Roy C, Viry A, Papudeshi B, Kot W, Hille F, Franz CMAP, Edwards R, Hansen LH. | Virus Res | 10.1016/j.virusres.2024.199435 | 2024 | |
| First Report of Pectobacterium parmentieri, One of the Causal Agents of Potato Blackleg and Tuber Soft Rot Diseases, in Israel | Tsror (Lahkim) L, Erlich O, Lebiush S, Galilov I, Hazanovsky M, Chalupowicz L, Reuven M, Dror O, Manulis-Sasson S. | Plant Dis | 10.1094/pdis-02-20-0226-pdn | 2020 | ||
| Comparison of temperature effects on the in vitro growth and disease development in potato tubers inoculated with bacteria Pectobacterium atrosepticum, P carotovorum subsp. carotovorum and Dickeya solani | Lebecka R, Flis B, Murawska Z. | Journal of phytopathology. | 10.1111/jph.12728 | 2018 | ||
| Metabolism | Lon Protease Is Important for Growth Under Stressful Conditions and Pathogenicity of the Phytopathogen, Bacterium Dickeya solani. | Figaj D, Czaplewska P, Przepiora T, Ambroziak P, Potrykus M, Skorko-Glonek J. | Int J Mol Sci | 10.3390/ijms21103687 | 2020 | |
| Pathogenicity | Physicochemical Characterization of Novel Bacteriophages of Pseudomonas syringe from Northwest Iran. | Zaer-Anaqz Z, Khakvar R, Mohammadi SA, Bannazadeh Baghi H, Koolivand D. | Phage (New Rochelle) | 10.1089/phage.2023.0023 | 2024 | |
| Bacteriophage-based strategies for biocontrol and treatment of infectious diseases. | Thi Trang Nhung T, Verma S, Ponne S, Meghwanshi GK, Schon T, Kumar R. | Comput Struct Biotechnol J | 10.1016/j.csbj.2025.06.046 | 2025 | ||
| Phyloproteomic study by MALDI-TOF MS in view of intraspecies variation in a significant homogenous phytopathogen Dickeya solani. | Motyka-Pomagruk A, Babinska-Wensierska W, Sledz W, Kaczorowska AK, Lojkowska E. | Sci Rep | 10.1038/s41598-023-46012-3 | 2023 | ||
| The Role of Intercellular Signaling in the Regulation of Bacterial Adaptive Proliferation. | Petrova O, Parfirova O, Gogoleva N, Vorob'ev V, Gogolev Y, Gorshkov V. | Int J Mol Sci | 10.3390/ijms24087266 | 2023 | ||
| Common and distinctive adaptive traits expressed in Dickeya dianthicola and Dickeya solani pathogens when exploiting potato plant host. | Raoul des Essarts Y, Pedron J, Blin P, Van Dijk E, Faure D, Van Gijsegem F. | Environ Microbiol | 10.1111/1462-2920.14519 | 2019 | ||
| Impact of nafcillin and diosmin on the attachment, invasion, and stress survival of Salmonella Typhimurium. | Narimisa N, Bostanghadiri N, Khoshbayan A, Gharaghani S, Razavi S, Masjedian Jazi F. | Sci Rep | 10.1038/s41598-025-90808-4 | 2025 | ||
| Fast and reliable screening system to preselect candidate Dickeya solani Tn5 mutants in plant tissue-induced genes | Fikowicz-Krosko J, Czajkowski R. | Eur J Plant Pathol | 10.1007/s10658-017-1238-1 | 2017 | ||
| Genetics | Comparative genomic and metabolomic study of three Streptomyces sp. differing in biological activity. | Gillon A, Abdelrahman O, Abou-Mansour E, L'Haridon F, Falquet L, Allard PM, Weisskopf L. | Microbiologyopen | 10.1002/mbo3.1389 | 2023 | |
| Pathogenicity | Toxicity effects of Eriocephalus africanus L. leaf essential oil against some molecularly identified phytopathogenic bacterial strains. | Behiry SI, El-Hefny M, Salem MZM. | Nat Prod Res | 10.1080/14786419.2019.1566824 | 2020 | |
| Complete Chromosome and Plasmid Sequences of Two Plant Pathogens, Dickeya solani Strains D s0432-1 and PPO 9019. | Khayi S, Blin P, Chong TM, Chan KG, Faure D. | Genome Announc | 10.1128/genomea.00233-18 | 2018 | ||
| Increase of Glycoalkaloid Content in Potato Tubers by Greening as a Method to Reduce the Spread of Pectobacterium and Dickeya spp. in Seed Production Systems. | Soltys-Kalina D, Grupa-Urbanska A, Lebecka R, Tallant M, Kellenberger I, Dupuis B. | Microorganisms | 10.3390/microorganisms11030605 | 2023 | ||
| Pathogenicity and Relative Abundance of Dickeya and Pectobacterium Species in Switzerland: An Epidemiological Dichotomy. | de Werra P, Debonneville C, Kellenberger I, Dupuis B. | Microorganisms | 10.3390/microorganisms9112270 | 2021 | ||
| Biosynthesis of Antifungal Solanimycin May Involve an Iterative Nonribosomal Peptide Synthetase Module. | Murphy AC, Corney M, Monson RE, Matilla MA, Salmond GPC, Leeper FJ. | ACS Chem Biol | 10.1021/acschembio.2c00947 | 2023 | ||
| Genetics | BuscoPhylo: a webserver for Busco-based phylogenomic analysis for non-specialists. | Sahbou AE, Iraqi D, Mentag R, Khayi S. | Sci Rep | 10.1038/s41598-022-22461-0 | 2022 | |
| The effect of temperature on the phenotypic features and the maceration ability of Dickeya solani strains isolated in Finland, Israel and Poland | Golanowska M, Kielar J, Lojkowska E. | Eur J Plant Pathol | 10.1007/s10658-016-1044-1 | 2017 | ||
| Assessment of a Potential Role of Dickeya dadantii DSM 18020 as a Pectinase Producer for Utilization in Poultry Diets Based on in silico Analyses. | Dittoe DK, Barabote RD, Rothrock MJ, Ricke SC. | Front Microbiol | 10.3389/fmicb.2020.00751 | 2020 | ||
| Genetics | Assembly and annotation of Solanum dulcamara and Solanum nigrum plant genomes, two nightshades with contrasting susceptibilities to Ralstonia solanacearum. | Franco Ortega S, James S, Gilbert L, Hogg K, Stevens H, Daff J, Friman VP, Harper AL. | G3 (Bethesda) | 10.1093/g3journal/jkaf119 | 2025 | |
| Enzymology | Effects of the vfm quorum-sensing system on the phenotypic features and virulence of Dickeya zeae WH1. | Tan X, Yang T, Wu M, Luo L, Zheng R, Liu Q, Zhu G, Sun Y. | Biofilm | 10.1016/j.bioflm.2025.100295 | 2025 | |
| Pathogenicity | Isolation and screening of actinomycetes producing antimicrobial substances from an extreme Moroccan biotope. | El Karkouri A, Assou SA, El Hassouni M. | Pan Afr Med J | 10.11604/pamj.2019.33.329.19018 | 2019 | |
| Enzymology | Matrix approach to the simultaneous detection of multiple potato pathogens by real-time PCR. | Nikitin MM, Statsyuk NV, Frantsuzov PA, Dzhavakhiya VG, Golikov AG. | J Appl Microbiol | 10.1111/jam.13686 | 2018 | |
| Fatty Acids from Hermetia illucens Larvae Fat Inhibit the Proliferation and Growth of Actual Phytopathogens. | Marusich E, Mohamed H, Afanasev Y, Leonov S. | Microorganisms | 10.3390/microorganisms8091423 | 2020 | ||
| Metabolism | Interplay between Coumarin Accumulation, Iron Deficiency and Plant Resistance to Dickeya spp. | Perkowska I, Potrykus M, Siwinska J, Siudem D, Lojkowska E, Ihnatowicz A. | Int J Mol Sci | 10.3390/ijms22126449 | 2021 | |
| Pathogenicity | Effectiveness of root-bark extract from Salvadora persica against the growth of certain molecularly identified pathogenic bacteria. | Salem MZM, Behiry SI, Salem AZM. | Microb Pathog | 10.1016/j.micpath.2018.02.044 | 2018 | |
| Genetics | Early Emergence of Dickeya solani Revealed by Analysis of Dickeya Diversity of Potato Blackleg and Soft Rot Causing Pathogens in Switzerland. | Pedron J, Schaerer S, Kellenberger I, Van Gijsegem F. | Microorganisms | 10.3390/microorganisms9061187 | 2021 | |
| Genetics | Comparison of Highly and Weakly Virulent Dickeya solani Strains, With a View on the Pangenome and Panregulon of This Species. | Golanowska M, Potrykus M, Motyka-Pomagruk A, Kabza M, Bacci G, Galardini M, Bazzicalupo M, Makalowska I, Smalla K, Mengoni A, Hugouvieux-Cotte-Pattat N, Lojkowska E. | Front Microbiol | 10.3389/fmicb.2018.01940 | 2018 | |
| Rapid eradication of bacterial phytopathogens by atmospheric pressure glow discharge generated in contact with a flowing liquid cathode. | Motyka A, Dzimitrowicz A, Jamroz P, Lojkowska E, Sledz W, Pohl P. | Biotechnol Bioeng | 10.1002/bit.26565 | 2018 | ||
| Development of a lateral flow immunoassay for rapid diagnosis of potato blackleg caused by Dickeya species. | Safenkova IV, Zaitsev IA, Varitsev YA, Byzova NA, Drenova NV, Zherdev AV, Dzantiev BB. | Anal Bioanal Chem | 10.1007/s00216-016-0140-6 | 2017 | ||
| Enzymology | Pectobacterium atrosepticum Biosensor for Monitoring Blackleg and Soft Rot Disease of Potato. | Hashemi Tameh M, Primiceri E, Chiriaco MS, Poltronieri P, Bahar M, Maruccio G. | Biosensors (Basel) | 10.3390/bios10060064 | 2020 | |
| Draft Genome Sequences of Four Dickeya dianthicola and Four Dickeya solani Strains. | Pritchard L, Humphris S, Baeyen S, Maes M, Van Vaerenbergh J, Elphinstone J, Saddler G, Toth I. | Genome Announc | 10.1128/genomea.00087-12 | 2013 | ||
| Pathogenicity | Antibacterial activity of the bioactive compounds identified in three woody plants against some pathogenic bacteria. | Ashmawy NA, Salem MZM, El-Hefny M, Abd El-Kareem MSM, El-Shanhorey NA, Mohamed AA, Salem AZM. | Microb Pathog | 10.1016/j.micpath.2018.05.032 | 2018 | |
| Dickeya fangzhongdai was prevalent and caused taro soft rot when coexisting with the Pectobacterium complex, with a preference for Araceae plants. | Zhang J, Sun D, Shen H, Pu X, Liu P, Lin B, Yang Q. | Front Microbiol | 10.3389/fmicb.2024.1431047 | 2024 | ||
| Metabolism | Salicylic and jasmonic acid pathways are necessary for defence against Dickeya solani as revealed by a novel method for Blackleg disease screening of in vitro grown potato. | Burra DD, Muhlenbock P, Andreasson E. | Plant Biol (Stuttg) | 10.1111/plb.12339 | 2015 | |
| Quorum quenching activity of endophytic Bacillus sp. EBS9 from Tecomella undulata and its biocontrol applications. | Paul E, Sharma C, Chaturvedi P, Bhatnagar P. | Curr Res Microb Sci | 10.1016/j.crmicr.2024.100307 | 2024 | ||
| Epidemiology of Dickeya dianthicola and Dickeya solani in ornamental hosts and potato studied using variable number tandem repeat analysis | Parkinson N, Pritchard L, Bryant R, Toth I, Elphinstone J. | Eur J Plant Pathol | 10.1007/s10658-014-0523-5 | 2015 | ||
| Genetics | fENko-Kae01 is a flagellum-specific jumbo phage infecting Klebsiella aerogenes. | Ranta K, Skurnik M, Kiljunen S. | BMC Microbiol | 10.1186/s12866-024-03387-1 | 2024 | |
| Salicylic acid can reduce infection symptoms caused by Dickeya solani in tissue culture grown potato (Solanum tuberosum L.) plants | Czajkowski R, van der Wolf JM, Krolicka A, Ozymko Z, Narajczyk M, Kaczynska N, Lojkowska E. | Eur J Plant Pathol | 10.1007/s10658-014-0561-z | 2015 | ||
| Enzymology | In vitro antibacterial, antifungal and antioxidant activities of Eucalyptus spp. leaf extracts related to phenolic composition. | Elansary HO, Salem MZM, Ashmawy NA, Yessoufou K, El-Settawy AAA. | Nat Prod Res | 10.1080/14786419.2017.1303698 | 2017 | |
| Regulators Involved in Dickeya solani Virulence, Genetic Conservation and Functional Variability. | Potrykus M, Golanowska M, Hugouvieux-Cotte-Pattat N, Lojkowska E. | Mol Plant Microbe Interact | 10.1094/mpmi-99-99-0004-le.testissue | 2015 | ||
| Transcriptome | Plasma Optimization as a Novel Tool to Explore Plant-Microbe Interactions in Climate Smart Agriculture. | Mohan B, Karthik C, Thingujam D, Pajerowska-Mukhtar KM, Thomas V, Mukhtar MS. | Microorganisms | 10.3390/microorganisms13010146 | 2025 | |
| Viunalikeviruses are environmentally common agents of horizontal gene transfer in pathogens and biocontrol bacteria. | Matilla MA, Fang X, Salmond GP. | ISME J | 10.1038/ismej.2014.150 | 2014 | ||
| N-acyl homoserine lactone cell-cell diffusible signalling in the Ralstonia solanacearum species complex. | Li P, Bez C, Zhang Y, Deng Y, Venturi V. | Mol Plant Pathol | 10.1111/mpp.13467 | 2024 | ||
| Eco-smart biocontrol strategies utilizing potent microbes for sustainable management of phytopathogenic diseases. | Haq IU, Rahim K, Yahya G, Ijaz B, Maryam S, Paker NP. | Biotechnol Rep (Amst) | 10.1016/j.btre.2024.e00859 | 2024 | ||
| First Report of Dickeya solani Causing Soft Rot in Imported Bulbs of Hyacinthus orientalis in China. | Chen XF, Zhang HL, Chen J. | Plant Dis | 10.1094/pdis-09-14-0916-pdn | 2015 | ||
| Chemotaxis of the Human Pathogen Pseudomonas aeruginosa to the Neurotransmitter Acetylcholine. | Matilla MA, Velando F, Tajuelo A, Martin-Mora D, Xu W, Sourjik V, Gavira JA, Krell T. | mBio | 10.1128/mbio.03458-21 | 2022 | ||
| Metabolism | Regulators involved in Dickeya solani virulence, genetic conservation, and functional variability. | Potrykus M, Golanowska M, Hugouvieux-Cotte-Pattat N, Lojkowska E. | Mol Plant Microbe Interact | 10.1094/mpmi-09-13-0270-r | 2014 | |
| Genetics | Novel Plant-Associated Brevibacillus and Lysinibacillus Genomospecies Harbor a Rich Biosynthetic Potential of Antimicrobial Compounds. | Jahne J, Le Thi TT, Blumenscheit C, Schneider A, Pham TL, Le Thi PT, Blom J, Vater J, Schweder T, Lasch P, Borriss R. | Microorganisms | 10.3390/microorganisms11010168 | 2023 | |
| Farm compost amendment and non-inversion tillage improve soil quality without increasing the risk for N and P leaching | D'Hose T, Bart Vandecasteele, Greet Ruysschaert, Jane Debode, Johan Van Vaerenbergh, Koen Willekens, Nicole Viaene, Thijs Vanden Nest, Wim Cornelis. | Agriculture, ecosystems and environment. | 10.1016/j.agee.2016.03.035 | 2016 | ||
| Environmental Bacteriophages of the Emerging Enterobacterial Phytopathogen, Dickeya solani, Show Genomic Conservation and Capacity for Horizontal Gene Transfer between Their Bacterial Hosts. | Day A, Ahn J, Fang X, Salmond GPC. | Front Microbiol | 10.3389/fmicb.2017.01654 | 2017 | ||
| Biodiversity of Dickeya spp. Isolated from Potato Plants and Water Sources in Temperate Climate. | Potrykus M, Golanowska M, Sledz W, Zoledowska S, Motyka A, Kolodziejska A, Butrymowicz J, Lojkowska E. | Plant Dis | 10.1094/pdis-04-15-0439-re | 2016 | ||
| Engineering of DNA Structures Attached to Magnetic Particles for Effective Trans- and Cis-Cleavage in Cas12-Based Biosensors. | Ivanov AV, Safenkova IV, Biketov SF, Zherdev AV, Dzantiev BB. | Int J Mol Sci | 10.3390/ijms24054484 | 2023 | ||
| Cardinal temperature differences, determined in vitro, between closely related species and subspecies of pectinolytic bacteria responsible for blackleg and soft rot on potatoes | du Raan S, Coutinho TA, van der Waals JE. | Eur J Plant Pathol | 10.1007/s10658-015-0773-x | 2016 | ||
| Plant growth-promoting activity and quorum quenching-mediated biocontrol of bacterial phytopathogens by Pseudomonas segetis strain P6. | Rodriguez M, Torres M, Blanco L, Bejar V, Sampedro I, Llamas I. | Sci Rep | 10.1038/s41598-020-61084-1 | 2020 | ||
| TOPAZ: asymmetric suffix array neighbourhood search for massive protein databases. | Medlar A, Holm L. | BMC Bioinformatics | 10.1186/s12859-018-2290-3 | 2018 | ||
| Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani. | Day A, Ahn J, Salmond GPC. | Front Microbiol | 10.3389/fmicb.2018.02169 | 2018 | ||
| Draft Genome Sequence of a Highly Virulent Strain of the Plant Pathogen Dickeya solani, IFB0099. | Golanowska M, Galardini M, Bazzicalupo M, Hugouvieux-Cotte-Pattat N, Mengoni A, Potrykus M, Slawiak M, Lojkowska E. | Genome Announc | 10.1128/genomea.00109-15 | 2015 | ||
| Enzymology | The Periplasmic Oxidoreductase DsbA Is Required for Virulence of the Phytopathogen Dickeya solani. | Przepiora T, Figaj D, Bogucka A, Fikowicz-Krosko J, Czajkowski R, Hugouvieux-Cotte-Pattat N, Skorko-Glonek J. | Int J Mol Sci | 10.3390/ijms23020697 | 2022 | |
| Efficacy of Soft-Rot Disease Biocontrol Agents in the Inhibition of Production Field Pathogen Isolates. | Cigna J, Robic K, Dewaegeneire P, Helias V, Beury A, Faure D. | Microorganisms | 10.3390/microorganisms11020372 | 2023 | ||
| Metabolism | Genomic diversity and organization of complex polysaccharide biosynthesis clusters in the genus Dickeya. | Ranjan M, Khokhani D, Nayaka S, Srivastava S, Keyser ZP, Ranjan A. | PLoS One | 10.1371/journal.pone.0245727 | 2021 | |
| Phylogeny | Characterization of Dickeya and Pectobacterium species by capillary electrophoretic techniques and MALDI-TOF MS. | Salplachta J, Kubesova A, Horky J, Matouskova H, Tesarova M, Horka M. | Anal Bioanal Chem | 10.1007/s00216-015-8920-y | 2015 | |
| Potential Control of Potato Soft Rot Disease by the Obligate Predators Bdellovibrio and Like Organisms. | Youdkes D, Helman Y, Burdman S, Matan O, Jurkevitch E. | Appl Environ Microbiol | 10.1128/aem.02543-19 | 2020 | ||
| Pathogenicity | Antibacterial activity of caffeine against plant pathogenic bacteria. | Sledz W, Los E, Paczek A, Rischka J, Motyka A, Zoledowska S, Piosik J, Lojkowska E. | Acta Biochim Pol | 10.18388/abp.2015_1092 | 2015 | |
| Advancements in Plasma Agriculture: A Review of Recent Studies. | Konchekov EM, Gusein-Zade N, Burmistrov DE, Kolik LV, Dorokhov AS, Izmailov AY, Shokri B, Gudkov SV. | Int J Mol Sci | 10.3390/ijms242015093 | 2023 | ||
| Metabolism | Nano-metals forming bacteria in Egypt. I. Synthesis, characterization and effect on some phytopathogenic bacteria in vitro. | Zaki SAE, Kamal A, Ashmawy NA, Shoeib AA. | Sci Rep | 10.1038/s41598-021-92171-6 | 2021 | |
| Genetics | Host Specificity of the Dickeya Bacteriophage PP35 Is Directed by a Tail Spike Interaction With Bacterial O-Antigen, Enabling the Infection of Alternative Non-pathogenic Bacterial Host. | Kabanova AP, Shneider MM, Korzhenkov AA, Bugaeva EN, Miroshnikov KK, Zdorovenko EL, Kulikov EE, Toschakov SV, Ignatov AN, Knirel YA, Miroshnikov KA. | Front Microbiol | 10.3389/fmicb.2018.03288 | 2018 | |
| Bacterial fitness for plant colonization is influenced by plant growth substrate. | Torres M, Price MN, Khasanova A, Kosina SM, Zhalnina K, Northen TR, Deutschbauer AM. | New Phytol | 10.1111/nph.70617 | 2025 | ||
| Function and mechanism of action of the small regulatory RNA ArcZ in Enterobacterales. | Dubois Q, Brual T, Oriol C, Mandin P, Condemine G, Gueguen E. | RNA | 10.1261/rna.080010.124 | 2024 | ||
| Genome Sequence of the Emerging Plant Pathogen Dickeya solani Strain RNS 08.23.3.1A. | Khayi S, Mondy S, Beury-Cirou A, Moumni M, Helias V, Faure D. | Genome Announc | 10.1128/genomea.01270-13 | 2014 | ||
| Metabolism | Multivariate Optimization of the FLC-dc-APGD-Based Reaction-Discharge System for Continuous Production of a Plasma-Activated Liquid of Defined Physicochemical and Anti-Phytopathogenic Properties. | Dzimitrowicz A, Jamroz P, Pohl P, Babinska W, Terefinko D, Sledz W, Motyka-Pomagruk A. | Int J Mol Sci | 10.3390/ijms22094813 | 2021 | |
| Novel findings in context of molecular diversity and abundance of bacteriophages in wastewater environments of Riyadh, Saudi Arabia. | Alanazi F, Nour I, Hanif A, Al-Ashkar I, Aljowaie RM, Eifan S. | PLoS One | 10.1371/journal.pone.0273343 | 2022 | ||
| Impact of Phage Therapy on Pseudomonas syringae pv. syringae and Plant Microbiome Dynamics Through Coevolution and Field Experiments. | Papp-Rupar M, Grace ER, Korotania N, Ciusa ML, Jackson RW, Rabiey M. | Environ Microbiol | 10.1111/1462-2920.70076 | 2025 | ||
| Metabolism | Two Pantoea agglomerans type III effectors can transform nonpathogenic and phytopathogenic bacteria into host-specific gall-forming pathogens. | Nissan G, Chalupowicz L, Sessa G, Manulis-Sasson S, Barash I. | Mol Plant Pathol | 10.1111/mpp.12860 | 2019 | |
| A Critical Study on DNA Probes Attached to Microplate for CRISPR/Cas12 Trans-Cleavage Activity. | Burkin KM, Ivanov AV, Zherdev AV, Dzantiev BB, Safenkova IV. | Biosensors (Basel) | 10.3390/bios13080824 | 2023 | ||
| Metabolism | Autographivirinae Bacteriophage Arno 160 Infects Pectobacterium carotovorum via Depolymerization of the Bacterial O-Polysaccharide. | Shneider MM, Lukianova AA, Evseev PV, Shpirt AM, Kabilov MR, Tokmakova AD, Miroshnikov KK, Obraztsova EA, Baturina OA, Shashkov AS, Ignatov AN, Knirel YA, Miroshnikov KA. | Int J Mol Sci | 10.3390/ijms21093170 | 2020 | |
| Biotechnology | Carboxypeptidase inhibitors from Solanaceae as a new subclass of pathogenesis related peptide aiming biotechnological targets for plant defense. | Gomes GDS, Esposito PC, Baracat-Pereira MC. | Front Mol Biosci | 10.3389/fmolb.2023.1259026 | 2023 | |
| Genetics | Investigating Additive and Replacing Horizontal Gene Transfers Using Phylogenies and Whole Genomes. | Kloub L, Gosselin S, Graf J, Gogarten JP, Bansal MS. | Genome Biol Evol | 10.1093/gbe/evae180 | 2024 | |
| The Effect of Some Wild Grown Plant Extracts and Essential Oils on Pectobacterium betavasculorum: The Causative Agent of Bacterial Soft Rot and Vascular Wilt of Sugar Beet. | Rastgou M, Rezaee Danesh Y, Ercisli S, Sayyed RZ, El Enshasy HA, Dailin DJ, Alfarraj S, Ansari MJ. | Plants (Basel) | 10.3390/plants11091155 | 2022 | ||
| Genetics | Comparative genomics of native plasmids from plant pathogenic Gammaproteobacteria. | Urriza M, Dimaria G, de Oliveira LO, Catara V, Murillo J. | DNA Res | 10.1093/dnares/dsaf009 | 2025 | |
| Antibacterial Activity of Fructose-Stabilized Silver Nanoparticles Produced by Direct Current Atmospheric Pressure Glow Discharge towards Quarantine Pests. | Dzimitrowicz A, Motyka-Pomagruk A, Cyganowski P, Babinska W, Terefinko D, Jamroz P, Lojkowska E, Pohl P, Sledz W. | Nanomaterials (Basel) | 10.3390/nano8100751 | 2018 | ||
| The carbon source-dependent pattern of antimicrobial activity and gene expression in Pseudomonas donghuensis P482. | Matuszewska M, Maciag T, Rajewska M, Wierzbicka A, Jafra S. | Sci Rep | 10.1038/s41598-021-90488-w | 2021 | ||
| Specificity and genetic polymorphism in the Vfm quorum sensing system of plant pathogenic bacteria of the genus Dickeya. | Hugouvieux-Cotte-Pattat N, Royer M, Gueguen E, Le Guen P, Sussmuth RD, Reverchon S, Cociancich S. | Environ Microbiol | 10.1111/1462-2920.15889 | 2022 | ||
| Prophylactic phage biocontrol prevents Burkholderia gladioli infection in a quantitative ex planta model of bacterial virulence. | Lauman P, Dennis JJ. | Appl Environ Microbiol | 10.1128/aem.01317-24 | 2024 | ||
| Exploring the Antimicrobial Potential and Stability of Black Soldier Fly (Hermentia illucens) Larvae Fat for Enhanced Food Shelf-Life. | Zabulione A, Salaseviciene A, Makstutiene N, Sarkinas A. | Gels | 10.3390/gels9100793 | 2023 | ||
| Pathogenicity | Shedding light on bacteria-host interactions with the aid of TnSeq approaches. | Torres M, Paszti S, Eberl L. | mBio | 10.1128/mbio.00390-24 | 2024 | |
| A new clade of Dickeya spp. plays a major role in potato blackleg outbreaks in North Finland | Degefu Y, Potrykus M, Golanowska M, Virtanen E, Lojkowska E. | Ann Appl Biol | 2013 | |||
| Xanthomonas euvesicatoria-Specific Bacteriophage BsXeu269p/3 Reduces the Spread of Bacterial Spot Disease in Pepper Plants. | Shopova E, Brankova L, Ivanov S, Urshev Z, Dimitrova L, Dimitrova M, Hristova P, Kizheva Y. | Plants (Basel) | 10.3390/plants12193348 | 2023 | ||
| Metabolism | Interplay of classic Exp and specific Vfm quorum sensing systems on the phenotypic features of Dickeya solani strains exhibiting different virulence levels. | Potrykus M, Hugouvieux-Cotte-Pattat N, Lojkowska E. | Mol Plant Pathol | 10.1111/mpp.12614 | 2018 | |
| Die-off of plant pathogenic bacteria in tile drainage and anoxic water from a managed aquifer recharge site. | Eisfeld C, van der Wolf JM, van Breukelen BM, Medema G, Velstra J, Schijven JF. | PLoS One | 10.1371/journal.pone.0250338 | 2021 | ||
| Enzymology | Soft Rot Enterobacteriaceae Are Carried by a Large Range of Insect Species in Potato Fields. | Rossmann S, Dees MW, Perminow J, Meadow R, Brurberg MB. | Appl Environ Microbiol | 10.1128/aem.00281-18 | 2018 | |
| Genetics | Draft genome sequence of the biocontrol strain Serratia plymuthica A30, isolated from rotting potato tuber tissue. | Czajkowski R, van der Wolf JM. | J Bacteriol | 10.1128/jb.01699-12 | 2012 | |
| Pathogenicity | Where the plasmids roam: large-scale sequence analysis reveals plasmids with large host ranges. | Brooks LE, Kaze M, Sistrom M. | Microb Genom | 10.1099/mgen.0.000244 | 2019 | |
| Enzymology | Polyamine signaling communications play a key role in regulating the pathogenicity of Dickeya fangzhongdai. | Xie C, Gu W, Chen Z, Liang Z, Huang S, Zhang L-H, Chen S. | Microbiol Spectr | 10.1128/spectrum.01965-23 | 2023 | |
| Comparison of Biosensing Methods Based on Different Isothermal Amplification Strategies: A Case Study with Erwinia amylovora. | Ivanov AV, Safenkova IV, Drenova NV, Zherdev AV, Dzantiev BB. | Biosensors (Basel) | 10.3390/bios12121174 | 2022 | ||
| Silencing of Phytopathogen Communication by the Halotolerant PGPR Staphylococcus equorum Strain EN21. | Vega C, Rodriguez M, Llamas I, Bejar V, Sampedro I. | Microorganisms | 10.3390/microorganisms8010042 | 2019 | ||
| Bridging Classical Methodologies in Salmonella Investigation with Modern Technologies: A Comprehensive Review. | Kitchens SR, Wang C, Price SB. | Microorganisms | 10.3390/microorganisms12112249 | 2024 | ||
| Phenotype | Linking crop traits to transcriptome differences in a progeny population of tetraploid potato. | Alexandersson E, Kushwaha S, Subedi A, Weighill D, Climer S, Jacobson D, Andreasson E. | BMC Plant Biol | 10.1186/s12870-020-2305-x | 2020 | |
| Pathogenicity | Quorum sensing-related activities of beneficial and pathogenic bacteria have important implications for plant and human health. | Hartmann A, Binder T, Rothballer M. | FEMS Microbiol Ecol | 10.1093/femsec/fiae076 | 2024 | |
| Pathogenicity | Productivity performance of peach trees, insecticidal and antibacterial bioactivities of leaf extracts as affected by nanofertilizers foliar application. | Mosa WFA, El-Shehawi AM, Mackled MI, Salem MZM, Ghareeb RY, Hafez EE, Behiry SI, Abdelsalam NR. | Sci Rep | 10.1038/s41598-021-89885-y | 2021 | |
| Phytopathological management through bacteriophages: enhancing food security amidst climate change. | Ul Haq I, Khan M, Khan I. | J Ind Microbiol Biotechnol | 10.1093/jimb/kuae031 | 2024 | ||
| Structure, Substrate Specificity and Role of Lon Protease in Bacterial Pathogenesis and Survival. | Kirthika P, Lloren KKS, Jawalagatti V, Lee JH. | Int J Mol Sci | 10.3390/ijms24043422 | 2023 | ||
| Diversity and Antimicrobial Activities of Actinobacteria Isolated from Mining Soils in Midelt Region, Morocco. | Ait Assou S, Anissi J, Sendide K, El Hassouni M. | ScientificWorldJournal | 10.1155/2023/6106673 | 2023 | ||
| Defense Responses and Metabolic Changes Involving Phenylpropanoid Pathway and PR Genes in Squash (Cucurbita pepo L.) following Cucumber mosaic virus Infection. | Abdelkhalek A, Kiraly L, Al-Mansori AA, Younes HA, Zeid A, Elsharkawy MM, Behiry SI. | Plants (Basel) | 10.3390/plants11151908 | 2022 | ||
| Bioactivity of essential oils extracted from Cupressus macrocarpa branchlets and Corymbia citriodora leaves grown in Egypt. | Salem MZM, Elansary HO, Ali HM, El-Settawy AA, Elshikh MS, Abdel-Salam EM, Skalicka-Wozniak K. | BMC Complement Altern Med | 10.1186/s12906-018-2085-0 | 2018 | ||
| Molecular genetic detection and differentiation of Xanthomonas oryzae pv. oryzicola, bacterial leaf streak agents of rice. | Koroleva ML, Blinova SA, Shvartsev AA, Kurochkin VE, Alekseev YI. | Vavilovskii Zhurnal Genet Selektsii | 10.18699/vjgb-22-66 | 2022 | ||
| SANSparallel: interactive homology search against Uniprot. | Somervuo P, Holm L. | Nucleic Acids Res | 10.1093/nar/gkv317 | 2015 | ||
| Self-demise of soft rot bacteria by activation of microbial predators by pectin-based carriers. | Sason G, Yedidia I, Nussinovitch A, Chalegoua E, Pun M, Jurkevitch E. | Microb Biotechnol | 10.1111/1751-7915.14271 | 2023 | ||
| Phylogeny | Two New Dickeya dadantii Phages with Odd Growth Patterns Expand the Diversity of Phages Infecting Soft Rot Pectobacteriaceae. | Djurhuus AM, Carstens AB, Neve H, Kot W, Hansen LH. | Phage (New Rochelle) | 10.1089/phage.2020.0039 | 2020 | |
| Pathogenicity | Implementation of a Non-Thermal Atmospheric Pressure Plasma for Eradication of Plant Pathogens from a Surface of Economically Important Seeds. | Motyka-Pomagruk A, Dzimitrowicz A, Orlowski J, Babinska W, Terefinko D, Rychlowski M, Prusinski M, Pohl P, Lojkowska E, Jamroz P, Sledz W. | Int J Mol Sci | 10.3390/ijms22179256 | 2021 | |
| Phylogeny | Pectobacterium versatile Bacteriophage Possum: A Complex Polysaccharide-Deacetylating Tail Fiber as a Tool for Host Recognition in Pectobacterial Schitoviridae. | Lukianova AA, Evseev PV, Shneider MM, Dvoryakova EA, Tokmakova AD, Shpirt AM, Kabilov MR, Obraztsova EA, Shashkov AS, Ignatov AN, Knirel YA, Dzhalilov FS, Miroshnikov KA. | Int J Mol Sci | 10.3390/ijms231911043 | 2022 | |
| Transcriptome | Comparative transcriptome profiling of potato cultivars infected by late blight pathogen Phytophthora infestans: Diversity of quantitative and qualitative responses. | Agho CA, Kaurilind E, Tahtjarv T, Runno-Paurson E, Niinemets U. | Genomics | 10.1016/j.ygeno.2023.110678 | 2023 | |
| Biosensors Used for Epifluorescence and Confocal Laser Scanning Microscopies to Study Dickeya and Pectobacterium Virulence and Biocontrol. | Bourigault Y, Chane A, Barbey C, Jafra S, Czajkowski R, Latour X. | Microorganisms | 10.3390/microorganisms9020295 | 2021 | ||
| Genetics | Prophage-Derived Regions in Curtobacterium Genomes: Good Things, Small Packages. | Evseev P, Lukianova A, Tarakanov R, Tokmakova A, Popova A, Kulikov E, Shneider M, Ignatov A, Miroshnikov K. | Int J Mol Sci | 10.3390/ijms24021586 | 2023 | |
| Testing the Antimicrobial Characteristics of Wood Materials: A Review of Methods. | Munir MT, Pailhories H, Eveillard M, Irle M, Aviat F, Dubreil L, Federighi M, Belloncle C. | Antibiotics (Basel) | 10.3390/antibiotics9050225 | 2020 | ||
| Threat of establishment of non-indigenous potato blackleg and tuber soft rot pathogens in Great Britain under climate change. | Skelsey P, Humphris SN, Campbell EJ, Toth IK. | PLoS One | 10.1371/journal.pone.0205711 | 2018 | ||
| T4-related bacteriophage LIMEstone isolates for the control of soft rot on potato caused by 'Dickeya solani'. | Adriaenssens EM, Van Vaerenbergh J, Vandenheuvel D, Dunon V, Ceyssens PJ, De Proft M, Kropinski AM, Noben JP, Maes M, Lavigne R. | PLoS One | 10.1371/journal.pone.0033227 | 2012 | ||
| Enzymology | Isolation of the Novel Phage PHB09 and Its Potential Use against the Plant Pathogen Pseudomonas syringae pv. actinidiae. | Liu Y, Liu M, Hu R, Bai J, He X, Jin Y. | Viruses | 10.3390/v13112275 | 2021 | |
| Genetics | Pectobacterium carotovorum Phage vB_PcaM_P7_Pc Is a New Member of the Genus Certrevirus. | Naligama KN, Halmillawewa AP. | Microbiol Spectr | 10.1128/spectrum.03126-22 | 2022 | |
| Management of potato brown rot disease using chemically synthesized CuO-NPs and MgO-NPs. | Rabea A, Naeem E, Balabel NM, Daigham GE. | Bot Stud | 10.1186/s40529-023-00393-w | 2023 | ||
| Genetics | Genomic and Phenotypic Biology of Novel Strains of Dickeya zeae Isolated From Pineapple and Taro in Hawaii: Insights Into Genome Plasticity, Pathogenicity, and Virulence Determinants. | Boluk G, Arizala D, Dobhal S, Zhang J, Hu J, Alvarez AM, Arif M. | Front Plant Sci | 10.3389/fpls.2021.663851 | 2021 | |
| Application of the Resazurin Cell Viability Assay to Monitor Escherichia coli and Salmonella Typhimurium Inactivation Mediated by Phages. | Costa P, Gomes ATPC, Braz M, Pereira C, Almeida A. | Antibiotics (Basel) | 10.3390/antibiotics10080974 | 2021 | ||
| Enzymology | Distribution of Pectobacterium Species Isolated in South Korea and Comparison of Temperature Effects on Pathogenicity. | Jee S, Choi JG, Lee YG, Kwon M, Hwang I, Heu S. | Plant Pathol J | 10.5423/ppj.oa.09.2019.0235 | 2020 | |
| Application of Silver Nanostructures Synthesized by Cold Atmospheric Pressure Plasma for Inactivation of Bacterial Phytopathogens from the Genera Dickeya and Pectobacterium. | Dzimitrowicz A, Motyka A, Jamroz P, Lojkowska E, Babinska W, Terefinko D, Pohl P, Sledz W. | Materials (Basel) | 10.3390/ma11030331 | 2018 | ||
| Phylogeny | Sequence diversity in the Dickeya fliC gene: phylogeny of the Dickeya genus and TaqMan® PCR for 'D. solani', new biovar 3 variant on potato in Europe. | Van Vaerenbergh J, Baeyen S, De Vos P, Maes M. | PLoS One | 10.1371/journal.pone.0035738 | 2012 | |
| Simultaneous detection of major blackleg and soft rot bacterial pathogens in potato by multiplex polymerase chain reaction. | Potrykus M, Sledz W, Golanowska M, Slawiak M, Binek A, Motyka A, Zoledowska S, Czajkowski R, Lojkowska E. | Ann Appl Biol | 10.1111/aab.12156 | 2014 | ||
| Genetics | Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB. | Buttimer C, Hendrix H, Oliveira H, Casey A, Neve H, McAuliffe O, Ross RP, Hill C, Noben JP, O'Mahony J, Lavigne R, Coffey A. | Front Microbiol | 10.3389/fmicb.2017.00044 | 2017 | |
| The First Polish Isolate of a Novel Species Pectobacterium aquaticum Originates from a Pomeranian Lake. | Babinska W, Motyka-Pomagruk A, Sledz W, Kowalczyk A, Kaczynski Z, Lojkowska E. | Int J Environ Res Public Health | 10.3390/ijerph18095041 | 2021 | ||
| Predatory bacteria as potential biofilm control and eradication agents in the food industry. | Mun W, Choi SY, Upatissa S, Mitchell RJ. | Food Sci Biotechnol | 10.1007/s10068-023-01310-4 | 2023 | ||
| Genetics | Isolation, Characterization and Draft Genome Analysis of Bacteriophages Infecting Acidovorax citrulli. | Gasic K, Obradovic M, Kuzmanovic N, Zlatkovic N, Ivanovic M, Ristic D, Obradovic A. | Front Microbiol | 10.3389/fmicb.2021.803789 | 2021 | |
| Framing the Future with Bacteriophages in Agriculture. | Svircev A, Roach D, Castle A. | Viruses | 10.3390/v10050218 | 2018 | ||
| Isolation and Characterization of Pectobacterium Phage vB_PatM_CB7: New Insights into the Genus Certrevirus. | Buttimer C, Lynch C, Hendrix H, Neve H, Noben JP, Lavigne R, Coffey A. | Antibiotics (Basel) | 10.3390/antibiotics9060352 | 2020 | ||
| The broad-spectrum antibiotic, zeamine, kills the nematode worm Caenorhabditis elegans. | Hellberg JE, Matilla MA, Salmond GP. | Front Microbiol | 10.3389/fmicb.2015.00137 | 2015 | ||
| Metabolism | Application of zinc chloride precipitation method for rapid isolation and concentration of infectious Pectobacterium spp. and Dickeya spp. lytic bacteriophages from surface water and plant and soil extracts. | Czajkowski R, Ozymko Z, Lojkowska E. | Folia Microbiol (Praha) | 10.1007/s12223-015-0411-1 | 2016 | |
| Phylogeny | Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus'. | Buttimer C, Lucid A, Neve H, Franz CMAP, O'Mahony J, Turner D, Lavigne R, Coffey A. | Viruses | 10.3390/v10080394 | 2018 | |
| Myxobacteria restrain Phytophthora invasion by scavenging thiamine in soybean rhizosphere via outer membrane vesicle-secreted thiaminase I. | Xia C, Zhao Y, Zhang L, Li X, Cheng Y, Wang D, Xu C, Qi M, Wang J, Guo X, Ye X, Huang Y, Shen D, Dou D, Cao H, Li Z, Cui Z. | Nat Commun | 10.1038/s41467-023-41247-0 | 2023 | ||
| Antifungal, Antibacterial, and Antioxidant Activities of Acacia Saligna (Labill.) H. L. Wendl. Flower Extract: HPLC Analysis of Phenolic and Flavonoid Compounds. | Al-Huqail AA, Behiry SI, Salem MZM, Ali HM, Siddiqui MH, Salem AZM. | Molecules | 10.3390/molecules24040700 | 2019 | ||
| Metabolism | Biosynthesis of the antifungal haterumalide, oocydin A, in Serratia, and its regulation by quorum sensing, RpoS and Hfq. | Matilla MA, Leeper FJ, Salmond GP. | Environ Microbiol | 10.1111/1462-2920.12839 | 2015 | |
| The rice foot rot pathogen Dickeya zeae alters the in-field plant microbiome. | Bez C, Esposito A, Thuy HD, Nguyen Hong M, Vale G, Licastro D, Bertani I, Piazza S, Venturi V. | Environ Microbiol | 10.1111/1462-2920.15726 | 2021 | ||
| Five Plant Natural Products Are Potential Type III Secretion System Inhibitors to Effectively Control Soft-Rot Disease Caused by Dickeya. | Hu A, Hu M, Chen S, Xue Y, Tan X, Zhou J. | Front Microbiol | 10.3389/fmicb.2022.839025 | 2022 | ||
| Gel-Forming Soil Conditioners of Combined Action: Field Trials in Agriculture and Urban Landscaping. | Smagin AV, Sadovnikova NB, Belyaeva EA, Krivtsova VN, Shoba SA, Smagina MV. | Polymers (Basel) | 10.3390/polym14235131 | 2022 | ||
| Metabolism | The rsmS (ybaM) mutation causes bypass suppression of the RsmAB post-transcriptional virulence regulation system in enterobacterial phytopathogens. | Monson RE, Apagyi K, Bowden SD, Simpson N, Williamson NR, Cubitt MF, Harris S, Toth IK, Salmond GPC. | Sci Rep | 10.1038/s41598-019-40970-3 | 2019 | |
| Phylogeny | Novel N4-Like Bacteriophages of Pectobacterium atrosepticum. | Buttimer C, Hendrix H, Lucid A, Neve H, Noben JP, Franz C, O'Mahony J, Lavigne R, Coffey A. | Pharmaceuticals (Basel) | 10.3390/ph11020045 | 2018 | |
| Plant-Microbiome Crosstalk: Dawning from Composition and Assembly of Microbial Community to Improvement of Disease Resilience in Plants. | Noman M, Ahmed T, Ijaz U, Shahid M, Azizullah, Li D, Manzoor I, Song F. | Int J Mol Sci | 10.3390/ijms22136852 | 2021 | ||
| Metabolism | Carbon catabolite repression in pectin digestion by the phytopathogen Dickeya dadantii. | Martis B S, Droux M, Nasser W, Reverchon S, Meyer S. | J Biol Chem | 10.1016/j.jbc.2021.101446 | 2022 | |
| Genetics | Phage Therapy for Crops: Concepts, Experimental and Bioinformatics Approaches to Direct Its Application. | Villalpando-Aguilar JL, Matos-Pech G, Lopez-Rosas I, Castelan-Sanchez HG, Alatorre-Cobos F. | Int J Mol Sci | 10.3390/ijms24010325 | 2022 | |
| Phylogeny | Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis. | Conceicao-Neto N, Zeller M, Lefrere H, De Bruyn P, Beller L, Deboutte W, Yinda CK, Lavigne R, Maes P, Maes P, Van Ranst M, Heylen E, Matthijnssens J. | Sci Rep | 10.1038/srep16532 | 2015 | |
| Enzymology | Biocontrol of the Potato Blackleg and Soft Rot Diseases Caused by Dickeya dianthicola. | Raoul des Essarts Y, Cigna J, Quetu-Laurent A, Caron A, Munier E, Beury-Cirou A, Helias V, Faure D. | Appl Environ Microbiol | 10.1128/aem.02525-15 | 2016 | |
| Metabolism | Genomic and metabolic comparison with Dickeya dadantii 3937 reveals the emerging Dickeya solani potato pathogen to display distinctive metabolic activities and T5SS/T6SS-related toxin repertoire. | Pedron J, Mondy S, des Essarts YR, Van Gijsegem F, Faure D. | BMC Genomics | 10.1186/1471-2164-15-283 | 2014 | |
| Genetics | When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens. | Krzyzanowska DM, Ossowicki A, Rajewska M, Maciag T, Jablonska M, Jablonska M, Obuchowski M, Heeb S, Jafra S. | Front Microbiol | 10.3389/fmicb.2016.00782 | 2016 | |
| Advances in bacteriophage-mediated control of plant pathogens. | Frampton RA, Pitman AR, Fineran PC. | Int J Microbiol | 10.1155/2012/326452 | 2012 | ||
| Genetics | The genus Serratia revisited by genomics. | Williams DJ, Grimont PAD, Cazares A, Grimont F, Ageron E, Pettigrew KA, Cazares D, Njamkepo E, Weill FX, Heinz E, Holden MTG, Thomson NR, Coulthurst SJ. | Nat Commun | 10.1038/s41467-022-32929-2 | 2022 | |
| Insight into biodiversity of the recently rearranged genus Dickeya. | Hugouvieux-Cotte-Pattat N, Pedron J, Van Gijsegem F. | Front Plant Sci | 10.3389/fpls.2023.1168480 | 2023 | ||
| Genetics | Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai. | Zhang J, Hu J, Shen H, Zhang Y, Sun D, Pu X, Yang Q, Fan Q, Lin B. | BMC Genomics | 10.1186/s12864-018-5154-3 | 2018 | |
| Genetics | Isolation of bacteriophages infecting Xanthomonas oryzae pv. oryzae and genomic characterization of novel phage vB_XooS_NR08 for biocontrol of bacterial leaf blight of rice. | Jain L, Kumar V, Jain SK, Kaushal P, Ghosh PK. | Front Microbiol | 10.3389/fmicb.2023.1084025 | 2023 | |
| Genetics | Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium. | Dzunkova M, La Clair JJ, Tyml T, Doud D, Schulz F, Piquer-Esteban S, Porcel Sanchis D, Osborn A, Robinson D, Louie KB, Bowen BP, Bowers RM, Lee J, Arnau V, Diaz-Villanueva W, Stepanauskas R, Gosliner T, Date SV, Northen TR, Cheng JF, Burkart MD, Woyke T. | Microbiome | 10.1186/s40168-023-01560-8 | 2023 | |
| Genetics | Genomic Characterization, Formulation and Efficacy in Planta of a Siphoviridae and Podoviridae Protection Cocktail against the Bacterial Plant Pathogens Pectobacterium spp. | Zaczek-Moczydlowska MA, Young GK, Trudgett J, Fleming CC, Campbell K, O'Hanlon R. | Viruses | 10.3390/v12020150 | 2020 | |
| Genetics | Comparative genomics, pangenomics, and phenomic studies of Pectobacterium betavasculorum strains isolated from sugar beet, potato, sunflower, and artichoke: insights into pathogenicity, virulence determinants, and adaptation to the host plant. | Borowska-Beszta M, Smoktunowicz M, Horoszkiewicz D, Jonca J, Waleron MM, Gawor J, Mika A, Sledzinski T, Waleron K, Waleron M. | Front Plant Sci | 10.3389/fpls.2024.1352318 | 2024 | |
| The regulation of antimicrobial peptide resistance in the transition to insect symbiosis. | Clayton AL, Enomoto S, Su Y, Dale C. | Mol Microbiol | 10.1111/mmi.13598 | 2017 | ||
| Genetics | Characterization and Genome Structure of Virulent Phage EspM4VN to Control Enterobacter sp. M4 Isolated From Plant Soft Rot. | Thanh NC, Nagayoshi Y, Fujino Y, Iiyama K, Furuya N, Hiromasa Y, Iwamoto T, Doi K. | Front Microbiol | 10.3389/fmicb.2020.00885 | 2020 | |
| Plant Dynamic Metabolic Response to Bacteriophage Treatment After Xanthomonas campestris pv. campestris Infection. | Papaianni M, Paris D, Woo SL, Fulgione A, Rigano MM, Parrilli E, Tutino ML, Marra R, Manganiello G, Casillo A, Limone A, Zoina A, Motta A, Lorito M, Capparelli R. | Front Microbiol | 10.3389/fmicb.2020.00732 | 2020 | ||
| Enzymology | A major-capsid-protein-based multiplex PCR assay for rapid identification of selected virulent bacteriophage types. | Born Y, Knecht LE, Eigenmann M, Bolliger M, Klumpp J, Fieseler L. | Arch Virol | 10.1007/s00705-019-04148-6 | 2019 | |
| Pathogenicity | N,N'-alkylated Imidazolium-derivatives act as quorum-sensing inhibitors targeting the Pectobacterium atrosepticum-induced symptoms on potato tubers. | des Essarts YR, Sabbah M, Comte A, Soulere L, Queneau Y, Dessaux Y, Helias V, Faure D. | Int J Mol Sci | 10.3390/ijms141019976 | 2013 | |
| Morphologically Different Pectobacterium brasiliense Bacteriophages PP99 and PP101: Deacetylation of O-Polysaccharide by the Tail Spike Protein of Phage PP99 Accompanies the Infection. | Lukianova AA, Shneider MM, Evseev PV, Shpirt AM, Bugaeva EN, Kabanova AP, Obraztsova EA, Miroshnikov KK, Senchenkova SN, Shashkov AS, Toschakov SV, Knirel YA, Ignatov AN, Miroshnikov KA. | Front Microbiol | 10.3389/fmicb.2019.03147 | 2019 | ||
| Metabolism | Biosynthesis of the acetyl-CoA carboxylase-inhibiting antibiotic, andrimid in Serratia is regulated by Hfq and the LysR-type transcriptional regulator, AdmX. | Matilla MA, Nogellova V, Morel B, Krell T, Salmond GP. | Environ Microbiol | 10.1111/1462-2920.13241 | 2016 | |
| Genetics | Newly Isolated Bacteriophages from the Podoviridae, Siphoviridae, and Myoviridae Families Have Variable Effects on Putative Novel Dickeya spp. | Alic S, Naglic T, Tusek-Znidaric M, Ravnikar M, Racki N, Peterka M, Dreo T. | Front Microbiol | 10.3389/fmicb.2017.01870 | 2017 | |
| Pectobacterium brasiliense: Genomics, Host Range and Disease Management. | Oulghazi S, Sarfraz S, Zaczek-Moczydlowska MA, Khayi S, Ed-Dra A, Lekbach Y, Campbell K, Novungayo Moleleki L, O'Hanlon R, Faure D. | Microorganisms | 10.3390/microorganisms9010106 | 2021 | ||
| Effective antioxidant, antimicrobial and anticancer activities of essential oils of horticultural aromatic crops in northern Egypt. | Elansary HO, Abdelgaleil SAM, Mahmoud EA, Yessoufou K, Elhindi K, El-Hendawy S. | BMC Complement Altern Med | 10.1186/s12906-018-2262-1 | 2018 | ||
| Metabolism | Plant health: feedback effect of root exudates-rhizobiome interactions. | Olanrewaju OS, Ayangbenro AS, Glick BR, Babalola OO. | Appl Microbiol Biotechnol | 10.1007/s00253-018-9556-6 | 2019 | |
| Synthetic gel structures in soils for sustainable potato farming. | Smagin A, Sadovnikova N, Smagina M. | Sci Rep | 10.1038/s41598-019-55205-8 | 2019 | ||
| Essential roles of Lon protease in the morpho-physiological traits of the rice pathogen Burkholderia glumae. | Goo E, Hwang I. | PLoS One | 10.1371/journal.pone.0257257 | 2021 | ||
| Ecology and Function of the Transmissible Locus of Stress Tolerance in Escherichia coli and Plant-Associated Enterobacteriaceae. | Wang Z, Hu H, Zhu T, Zheng J, Ganzle MG, Simpson DJ. | mSystems | 10.1128/msystems.00378-21 | 2021 | ||
| Genetics | Larger Than Life: Isolation and Genomic Characterization of a Jumbo Phage That Infects the Bacterial Plant Pathogen, Agrobacterium tumefaciens. | Attai H, Boon M, Phillips K, Noben JP, Lavigne R, Brown PJB. | Front Microbiol | 10.3389/fmicb.2018.01861 | 2018 | |
| Bacteriophages and Bacterial Plant Diseases. | Buttimer C, McAuliffe O, Ross RP, Hill C, O'Mahony J, Coffey A. | Front Microbiol | 10.3389/fmicb.2017.00034 | 2017 | ||
| Metabolism | Intact salicylic acid signalling is required for potato defence against the necrotrophic fungus Alternaria solani. | Brouwer SM, Odilbekov F, Burra DD, Lenman M, Hedley PE, Grenville-Briggs L, Alexandersson E, Liljeroth E, Andreasson E. | Plant Mol Biol | 10.1007/s11103-020-01019-6 | 2020 | |
| Phylogeny | Detection, identification and differentiation of Pectobacterium and Dickeya species causing potato blackleg and tuber soft rot: a review. | Czajkowski R, Perombelon M, Jafra S, Lojkowska E, Potrykus M, van der Wolf J, Sledz W. | Ann Appl Biol | 10.1111/aab.12166 | 2015 | |
| Metabolism | N-acyl homoserine lactones in diverse Pectobacterium and Dickeya plant pathogens: diversity, abundance, and involvement in virulence. | Crepin A, Beury-Cirou A, Barbey C, Farmer C, Helias V, Burini JF, Faure D, Latour X. | Sensors (Basel) | 10.3390/s120303484 | 2012 | |
| Genetics | Characterization of Novel Bacteriophages for Biocontrol of Bacterial Blight in Leek Caused by Pseudomonas syringae pv. porri. | Rombouts S, Volckaert A, Venneman S, Declercq B, Vandenheuvel D, Allonsius CN, Van Malderghem C, Jang HB, Briers Y, Noben JP, Klumpp J, Van Vaerenbergh J, Maes M, Lavigne R. | Front Microbiol | 10.3389/fmicb.2016.00279 | 2016 | |
| Genetics | Applications of New Breeding Technologies for Potato Improvement. | Hameed A, Zaidi SS, Shakir S, Mansoor S. | Front Plant Sci | 10.3389/fpls.2018.00925 | 2018 | |
| Metabolism | A Complex Mechanism Involving LysR and TetR/AcrR That Regulates Iron Scavenger Biosynthesis in Pseudomonas donghuensis HYS. | Chen M, Wang P, Xie Z. | J Bacteriol | 10.1128/jb.00087-18 | 2018 | |
| Phylogeny | Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates. | Alic S, Pedron J, Dreo T, Van Gijsegem F. | BMC Genomics | 10.1186/s12864-018-5332-3 | 2019 | |
| Top 10 plant pathogenic bacteria in molecular plant pathology. | Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow M, Verdier V, Beer SV, Machado MA, Toth I, Salmond G, Foster GD. | Mol Plant Pathol | 10.1111/j.1364-3703.2012.00804.x | 2012 | ||
| Genetics | Transcriptome and Comparative Genomics Analyses Reveal New Functional Insights on Key Determinants of Pathogenesis and Interbacterial Competition in Pectobacterium and Dickeya spp. | Bellieny-Rabelo D, Tanui CK, Miguel N, Kwenda S, Shyntum DY, Moleleki LN. | Appl Environ Microbiol | 10.1128/aem.02050-18 | 2019 | |
| Role and regulation of the Flp/Tad pilus in the virulence of Pectobacterium atrosepticum SCRI1043 and Pectobacterium wasabiae SCC3193. | Nykyri J, Mattinen L, Niemi O, Adhikari S, Koiv V, Somervuo P, Fang X, Auvinen P, Mae A, Palva ET, Pirhonen M. | PLoS One | 10.1371/journal.pone.0073718 | 2013 | ||
| Metabolism | Quorum sensing signaling molecules produced by reference and emerging soft-rot bacteria (Dickeya and Pectobacterium spp.). | Crepin A, Barbey C, Beury-Cirou A, Helias V, Taupin L, Reverchon S, Nasser W, Faure D, Dufour A, Orange N, Feuilloley M, Heurlier K, Burini JF, Latour X. | PLoS One | 10.1371/journal.pone.0035176 | 2012 | |
| Genomic insights into the evolutionary origin of Xanthomonas axonopodis pv. citri and its ecological relatives. | Midha S, Patil PB. | Appl Environ Microbiol | 10.1128/aem.01654-14 | 2014 | ||
| Systematic Analysis of c-di-GMP Signaling Mechanisms and Biological Functions in Dickeya zeae EC1. | Chen Y, Zhou J, Lv M, Liang Z, Parsek MR, Zhang LH. | mBio | 10.1128/mbio.02993-20 | 2020 | ||
| Metabolism | Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6. | Agaras BC, Iriarte A, Valverde CF. | PLoS One | 10.1371/journal.pone.0194088 | 2018 | |
| Enzymology | Identification of bacteriophages for biocontrol of the kiwifruit canker phytopathogen Pseudomonas syringae pv. actinidiae. | Frampton RA, Taylor C, Holguin Moreno AV, Visnovsky SB, Petty NK, Pitman AR, Fineran PC. | Appl Environ Microbiol | 10.1128/aem.00062-14 | 2014 | |
| The tip of the tail needle affects the rate of DNA delivery by bacteriophage P22. | Leavitt JC, Gogokhia L, Gilcrease EB, Bhardwaj A, Cingolani G, Casjens SR. | PLoS One | 10.1371/journal.pone.0070936 | 2013 | ||
| Pathogenicity | Genome-Wide Identification of Dickeya solani Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host Solanum tuberosum and a Weed-Host Solanum dulcamara. | Czajkowski R, Fikowicz-Krosko J, Maciag T, Rabalski L, Czaplewska P, Jafra S, Richert M, Krychowiak-Masnicka M, Hugouvieux-Cotte-Pattat N | Front Plant Sci | 10.3389/fpls.2020.580330 | 2020 | |
| Phylogeny | The uniform structure of O-polysaccharides isolated from Dickeya solani strains of different origin. | Ossowska K, Czerwicka M, Sledz W, Zoledowska S, Motyka A, Golanowska M, Condemine G, Lojkowska E, Kaczynski Z | Carbohydr Res | 10.1016/j.carres.2017.04.001 | 2017 | |
| Systemic Colonization and Expression of Disease Symptoms on Bittersweet Nightshade (Solanum dulcamara) Infected with a GFP-Tagged Dickeya solani IPO2222 (IPO2254). | Fikowicz-Krosko J, Czajkowski R | Plant Dis | 10.1094/PDIS-08-17-1147-RE | 2018 | ||
| Oxygen Availability Influences Expression of Dickeya solani Genes Associated With Virulence in Potato (Solanum tuberosum L.) and Chicory (Cichorium intybus L.). | Lisicka W, Fikowicz-Krosko J, Jafra S, Narajczyk M, Czaplewska P, Czajkowski R | Front Plant Sci | 10.3389/fpls.2018.00374 | 2018 | ||
| Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222(T). | Khayi S, Blin P, Chong TM, Chan KG, Faure D | Stand Genomic Sci | 10.1186/s40793-016-0208-0 | 2016 | ||
| Genetics | Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani. | Khayi S, Blin P, Pedron J, Chong TM, Chan KG, Moumni M, Helias V, Van Gijsegem F, Faure D | BMC Genomics | 10.1186/s12864-015-1997-z | 2015 | |
| Resistance of Dickeya solani strain IPO 2222 to lytic bacteriophage PhiD5 results in fitness tradeoffs for the bacterium during infection. | Bartnik P, Lewtak K, Fiolka M, Czaplewska P, Narajczyk M, Czajkowski R | Sci Rep | 10.1038/s41598-022-14956-7 | 2022 | ||
| Pseudomonas halotolerans sp. nov., a halotolerant biocontrol agent with plant-growth properties | Sanchez P, Castillo I, Martinez-Checa F, Sampedro I, Llamas I. | Front Plant Sci | 2025 | |||
| Phylogeny | Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum). | van der Wolf JM, Nijhuis EH, Kowalewska MJ, Saddler GS, Parkinson N, Elphinstone JG, Pritchard L, Toth IK, Lojkowska E, Potrykus M, Waleron M, de Vos P, Cleenwerck I, Pirhonen M, Garlant L, Helias V, Pothier JF, Pfluger V, Duffy B, Tsror L, Manulis S | Int J Syst Evol Microbiol | 10.1099/ijs.0.052944-0 | 2013 | |
| Phylogeny | Peribacillus castrilensis sp. nov.: A Plant-Growth-Promoting and Biocontrol Species Isolated From a River Otter in Castril, Granada, Southern Spain. | Rodriguez M, Reina JC, Sampedro I, Llamas I, Martinez-Checa F | Front Plant Sci | 10.3389/fpls.2022.896728 | 2022 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20529 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28711 |
| #68368 | Automatically annotated from API 20E . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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