Name: Caballeronia zhejiangensis OP-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23817

Type strain:

Species: Caballeronia zhejiangensis

Strain Designation: OP-1

Culture col. no.: DSM 28073, CCTCC AB 2010354, KCTC 23300

Strain history: <- KCTC <- P. Lu et al., Key Lab. of Microbiological Engineering of Agricultural Environment, Nanjing Agricultural University; OP-1

NCBI tax ID(s): 871203 (species)

SI-ID 380308

KCTC 23300

Section

Caballeronia zhejiangensis OP-1 is a mesophilic, Gram-negative, rod-shaped human pathogen that was isolated from sludge from waste-water treatment plant of a pesticide manufactoring plant.

Gram-negative
rod-shaped
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia zhejiangensis**
	Full Scientific Name (LPSN)	Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016

	Synonym	Burkholderia zhejiangensis
	Synonym	Paraburkholderia zhejiangensis

Information on morphological and physiological properties Morphology

[Ref.: #30412]	Gram stain	negative

[Ref.: #30412]	Cell length	1.3 µm

[Ref.: #30412]	Cell width	0.35 µm

[Ref.: #30412]	Cell shape	rod-shaped

[Ref.: #30412]	Motility	no

[Ref.: #20490]

Incubation period

8-14 days

Multimedia content

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #20490]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20490]	growth	28 °C
[Ref.: #30412]	growth	04-40 °C
[Ref.: #30412]	optimum	30 °C

[Ref.: #20490]	Temperature range	mesophilic
[Ref.: #30412]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30412]			optimum	7
[Ref.: #30412]			growth	04-10

Information on physiology and metabolism Physiology and metabolism

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Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30412]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30412]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30412]	decanoate ChEBI	+	carbon source
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30412]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #30412]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30412]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30412]	mannose ChEBI	+	carbon source
[Ref.: #30412]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #30412]	phenylacetate ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #30412]	urease	+	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #20490]	23410	+	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	-	+	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20490]	Sample type/isolated from	sludge from waste-water treatment plant of a pesticide manufactoring plant
[Ref.: #20490]	Geographic location (country and/or sea, region)	Zhejinag
[Ref.: #20490]	Country	China
[Ref.: #20490]	Country ISO 3 Code	CHN
[Ref.: #20490]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Water treatment plant
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

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Global distribution of 16S sequence HM802212 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	545
Soil Samples	6263
Animal Samples	1567
Plant Samples	3060
Total Samples	11435

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20490]	Pathogenicity (human)	yes, in single cases
[Ref.: #20490]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20490]	Burkholderia zhejiangensis strain OP-1 16S ribosomal RNA gene, partial sequence	HM802212	1490	ENA	871203 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caballeronia zhejiangensis OP-1	GCA_000698575	contig	GenBank	871203 tax ID	*
[Ref.: #66792]	Caballeronia zhejiangensis OP-1	2772190654	draft	JGI IMG/M	871203 tax ID	*

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GC-content

59.4 mol%

Availability in culture collections External links

[Ref.: #20490]

Culture collection no.

DSM 28073, CCTCC AB 2010354, KCTC 23300

[Ref.: #87847]

SI-ID 380308

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia megalochromosomata sp. nov., isolated from grassland soil.	Baek I, Seo B, Lee I, Lee K, Park SC, Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.000046	2015	*
Phylogeny	Burkholderia jiangsuensis sp. nov., a methyl parathion degrading bacterium, isolated from methyl parathion contaminated soil.	Liu XY, Li CX, Luo XJ, Lai QL, Xu JH	Int J Syst Evol Microbiol	10.1099/ijs.0.064444-0	2014	*
Phylogeny	Burkholderia grimmiae sp. nov., isolated from a xerophilous moss (Grimmia montana).	Tian Y, Kong BH, Liu SL, Li CL, Yu R, Liu L, Li YH	Int J Syst Evol Microbiol	10.1099/ijs.0.045492-0	2012	*
Phylogeny	Burkholderia zhejiangensis sp. nov., a methyl-parathion-degrading bacterium isolated from a wastewater-treatment system.	Lu P, Zheng LQ, Sun JJ, Liu HM, Li SP, Hong Q, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035428-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20490

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28073

#30412

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26749 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87847

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380308.1 )

#26749

IJSEM 1337 2012 ( DOI 10.1099/ijs.0.035428-0 , PubMed 21828021 )

* These data were automatically processed and therefore are not curated

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