Caballeronia zhejiangensis (DSM 28073, CCTCC AB 2010354, KCTC 23300)

Name: Caballeronia zhejiangensis (DSM 28073, CCTCC AB 2010354, KCTC 23300)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23817

Type strain

Strain Designation OP-1

Culture col. no. DSM 28073 CCTCC AB 2010354 KCTC 23300 OP-1

NCBI tax ID(s) 871203

Special Collections DSMZ KCTC Literature strains

Links

Caballeronia zhejiangensis OP-1 is a mesophilic, Gram-negative, rod-shaped prokaryote that was isolated from sludge from waste-water treatment plant of a pesticide manufactoring plant.

Gram-negative rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 380308

LMG 27258,DSM 28073,KCTC 23300

@ref 20215

Last LPSN update 2025-12-16 09:52:44

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Caballeronia

Species Caballeronia zhejiangensis

Full scientific name Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016

Synonyms (2)

Paraburkholderia zhejiangensis
Burkholderia zhejiangensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
30412	negative	1.3 µm	0.35 µm	rod-shaped
125439	negative					92.9

Colony morphology

20490

Incubation period8-14 days

Multimedia

@ref:	20490
multimedia content:	DSM_28073.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_28073.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20490	MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462)		Medium recipe at MediaDive	Name: MINERAL MEDIUM (BRUNNER) WITH VITAMINS (DSMZ Medium 462) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Peptone 5.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Meat extract 3.0 g/l Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxamine 0.000125 g/l ZnSO4 x 7 H2O 0.0001 g/l Nicotinic acid 5e-05 g/l Vitamin B12 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l p-Aminobenzoate 2.5e-05 g/l Thiamine-HCl x 2 H2O 2.5e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Calcium pantothenate 1.25e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Biotin 5e-06 g/l Distilled water
20490	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20490	positive	growth	28	mesophilic
30412	positive	growth	04-40
30412	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30412	positive	optimum	7
30412	positive	growth	04-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.4

Spore formation

30412

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
30412	22599 ChEBI	arabinose	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
30412	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
30412	27689 ChEBI	decanoate	+	carbon source
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
30412	24265 ChEBI	gluconate	+	carbon source
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
30412	17234 ChEBI	glucose	+	carbon source
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
30412	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
30412	37684 ChEBI	mannose	+	carbon source
30412	506227 ChEBI	N-acetylglucosamine	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
30412	18401 ChEBI	phenylacetate	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
30412	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
20490	+	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	-	+	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Water treatment plant
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20490	sludge from waste-water treatment plant of a pesticide manufactoring plant	Zhejinag	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence HM802212 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	545
Soil Samples	6263
Animal Samples	1567
Plant Samples	3060
Total Samples	11435

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
20490	yes, in single cases	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	SOAPdenovo v1.05 assembly for Caballeronia zhejiangensis OP-1	contig	GCA_000698575	871203.4	2772190654	871203	55.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20490	Burkholderia zhejiangensis strain OP-1 16S ribosomal RNA gene, partial sequence	HM802212	1490		871203

GC content

30412

GC-content (mol%)59.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Caballeronia zhejiangensis OP-1
NCBI: GCA_000698575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.60	no
125439	motility	BacteriaNetⓘ	yes	62.70	no
125439	gram_stain	BacteriaNetⓘ	negative	92.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia megalochromosomata sp. nov., isolated from grassland soil.	Baek I, Seo B, Lee I, Lee K, Park SC, Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.000046	2015
Phylogeny	Burkholderia jiangsuensis sp. nov., a methyl parathion degrading bacterium, isolated from methyl parathion contaminated soil.	Liu XY, Li CX, Luo XJ, Lai QL, Xu JH	Int J Syst Evol Microbiol	10.1099/ijs.0.064444-0	2014
Phylogeny	Burkholderia grimmiae sp. nov., isolated from a xerophilous moss (Grimmia montana).	Tian Y, Kong BH, Liu SL, Li CL, Yu R, Liu L, Li YH	Int J Syst Evol Microbiol	10.1099/ijs.0.045492-0	2012
Phylogeny	Burkholderia zhejiangensis sp. nov., a methyl-parathion-degrading bacterium isolated from a wastewater-treatment system.	Lu P, Zheng LQ, Sun JJ, Liu HM, Li SP, Hong Q, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035428-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20490	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28073
#26749	IJSEM 1337 2012 ( DOI 10.1099/ijs.0.035428-0 , PubMed 21828021 )
#30412	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26749
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Caballeronia zhejiangensis (DSM 28073, CCTCC AB 2010354, KCTC 23300)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000698575

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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