Burkholderia vietnamiensis (DSM 28454, CN 1, BB7a)

Name: Burkholderia vietnamiensis (DSM 28454, CN 1, BB7a)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23816

Type strain

Strain Designation BB7a, ID 96-569

Culture col. no. DSM 28454 CN 1 BB7a ID 96-569

NCBI tax ID(s) 60552

Special Collections DSMZ

History <- A. Schippers, BGR Hannover; CN1 <- P. Blumenroth <- H. Dettmers

Links

Burkholderia vietnamiensis BB7a is a bacterium that was isolated from sewage sludge, water treatment plant.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 404256

DSM 28454

@ref 20215

Last LPSN update 2026-02-09 11:23:49

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Burkholderia

Species Burkholderia vietnamiensis

Full scientific name Burkholderia vietnamiensis Gillis et al. 1995

BacDive ID	Other strains from **Burkholderia vietnamiensis** (48)	Type strain
1939	B. vietnamiensis TVV75, CCUG 34169, DSM 11319, LMG 10929, ... (type strain)
1929	B. vietnamiensis G4, R1808, DSM 11737, ATCC 53617
141814	B. vietnamiensis CCUG 7246, LMG 6998
141996	B. vietnamiensis CCUG 9631, LMG 6999
145438	B. vietnamiensis CCUG 28508
146102	B. vietnamiensis CCUG 30382
146523	B. vietnamiensis CCUG 31370, LMG 16232
146526	B. vietnamiensis CCUG 31373, LMG 16233
146682	B. vietnamiensis CCUG 31794, LMG 16234
146683	B. vietnamiensis CCUG 31797
147348	B. vietnamiensis CCUG 33416
147753	B. vietnamiensis CCUG 34170, LMG 10930
147812	B. vietnamiensis CCUG 34271
147865	B. vietnamiensis CCUG 34406
147872	B. vietnamiensis CCUG 34413, LMG 16228
147875	B. vietnamiensis CCUG 34416, LMG 16230
147876	B. vietnamiensis CCUG 34417
148086	B. vietnamiensis CCUG 34799
148370	B. vietnamiensis CCUG 35298
148393	B. vietnamiensis CCUG 35344
148395	B. vietnamiensis CCUG 35351
148396	B. vietnamiensis CCUG 35352
148512	B. vietnamiensis CCUG 35576
148517	B. vietnamiensis CCUG 35582
148579	B. vietnamiensis CCUG 35665, LMG R-924
148728	B. vietnamiensis CCUG 35865
148748	B. vietnamiensis CCUG 35895
148749	B. vietnamiensis CCUG 35896
148750	B. vietnamiensis CCUG 35897
148767	B. vietnamiensis CCUG 35917
149082	B. vietnamiensis CCUG 36834
149301	B. vietnamiensis CCUG 37450
149323	B. vietnamiensis CCUG 37502, LMG 16875
149429	B. vietnamiensis CCUG 37731
149430	B. vietnamiensis CCUG 37732
149431	B. vietnamiensis CCUG 37733
150018	B. vietnamiensis CCUG 38849
150374	B. vietnamiensis CCUG 39758
150531	B. vietnamiensis CCUG 41504
152114	B. vietnamiensis CCUG 45827
152665	B. vietnamiensis CCUG 47311
152688	B. vietnamiensis CCUG 47362
154694	B. vietnamiensis CCUG 54864
155014	B. vietnamiensis CCUG 56085
155989	B. vietnamiensis CCUG 59920
156029	B. vietnamiensis CCUG 60124
156268	B. vietnamiensis CCUG 60965
175023	B. vietnamiensis 114284, DSM 114284

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97
125439	negative	96.4

Colony morphology

20489

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20489	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20489	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	95.9

Spore formation

@ref	Spore formation	Confidence
125439		96.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
20489	catalase	+	1.11.1.6
20489	cytochrome-c oxidase	+	1.9.3.1
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
20489	-	-	+	-	-	-	-	+	+	+	+	+	+	-	+	+	+/-	+	+	+	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Sewage sludge
#Engineered	#Waste	#Water treatment plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20489	sewage sludge, water treatment plant	Hannover-Herrenhausen, Klärwerk	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20489	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	Burkholderia vietnamiensis strain FDAARGOS_1590	complete		60552.189	60552	99
124043	ASM2073642v1 assembly for Burkholderia vietnamiensis FDAARGOS_1590	chromosome	GCA_020736425	60552.169	60552	88.34

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Burkholderia vietnamiensis strain FDAARGOS_1590
PATRIC: 60552.189

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.70	no
125439	motility	BacteriaNetⓘ	yes	75.40	no
125439	gram_stain	BacteriaNetⓘ	negative	96.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	95.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia vietnamiensis strain FDAARGOS_1590 strain Not applicable
PATRIC: 60552.189

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	no
125438	anaerobic	anaerobicⓘ	no	97.10	no
125438	spore-forming	spore-formingⓘ	no	85.38	no
125438	aerobic	aerobicⓘ	yes	86.63	no
125438	thermophilic	thermophileⓘ	no	97.46	yes
125438	flagellated	motile2+ⓘ	yes	84.59	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20489	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28454
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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