Bartonella acomydis (DSM 28537, JCM 17706, KCTC 23907)

Name: Bartonella acomydis (DSM 28537, JCM 17706, KCTC 23907)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23781

Type strain

Strain Designation KS2-1

Culture col. no. DSM 28537 JCM 17706 KCTC 23907 KS2-1

NCBI tax ID(s) 686234

Special Collections DSMZ JCM KCTC Literature strains

History DSMZ <- KCTC <- S. Sato; KS2-1 JCM <-- S. Sato KS2-1. KCTC <- S Maruyama, Nihon Univ., Japan

Links

Bartonella acomydis KS2-1 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from blood of golden spiny mouse ; imported pet.

Gram-negative ovoid-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402244

KCTC 23907,JCM 17706,DSM 28537

@ref 20215

Last LPSN update 2026-05-29 08:30:29

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Bartonellaceae

Genus Bartonella

Species Bartonella acomydis

Full scientific name Bartonella acomydis Sato et al. 2013

BacDive ID	Other strains from **Bartonella acomydis** (1)	Type strain
162080	B. acomydis JCM 17707, KCTC 23908

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
30683	negative	1.39 µm	0.52 µm	ovoid-shaped
67771
67771	negative

Colony morphology

20451

Incubation period2-3 days

Pigmentation

30683

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20451	COLUMBIA BLOOD AGAR (DSMZ Medium 429)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429; with strain-specific modifications) Composition: Horse blood 100.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
20451	positive	growth	37
30683	positive	optimum	35
67770	positive	growth	35
67771	positive	growth	35-37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30683	aerobe
67771	microaerophile
125439	facultative anaerobe	99.636

Spore formation

@ref	Spore formation	Confidence
125439		99.998

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30683	29016 ChEBI	arginine	+	carbon source
30683	16296 ChEBI	D-tryptophan	+	carbon source
30683	15428 ChEBI	glycine	+	carbon source
30683	25017 ChEBI	leucine	+	carbon source
30683	26271 ChEBI	proline	+	carbon source

Enzymes

@ref	Value	Activity	Ec
20451	catalase	-	1.11.1.6
20451	cytochrome-c oxidase	-	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
20451	blood of golden spiny mouse (Acomys russatus); imported pet	Acomys russatus	Japan	JPN	Asia
67770	Blood of golden spiny mouse (Acomys russatus)	Acomys russatus
67771	From blood of golden spiny mouse, `Acomys russatus`		Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB602533 (>99% sequence identity) for Bartonella from Microbeatlas

Aquatic Samples	22
Soil Samples	29
Animal Samples	118
Plant Samples	3
Total Samples	172

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
20451	yes, in single cases	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954302v1 assembly for Bartonella acomydis JCM 17706	contig	GCA_039543025	686234	59.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20451	Bartonella acomydis gene for 16S rRNA, partial sequence, strain: KS2-1	AB602533	1349		686234

GC content

20451

GC-content (mol%)37.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3954302v1 assembly for Bartonella acomydis JCM 17706
NCBI: GCA_039543025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	99.64	no
125439	motility	BacteriaNetⓘ	no	69.03	no
125439	gram_stain	BacteriaNetⓘ	negative	89.68	no
125439	spore_formation	BacteriaNetⓘ	no	100.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bartonella jaculi sp. nov., Bartonella callosciuri sp. nov., Bartonella pachyuromydis sp. nov. and Bartonella acomydis sp. nov., isolated from wild Rodentia.	Sato S, Kabeya H, Fujinaga Y, Inoue K, Une Y, Yoshikawa Y, Maruyama S	Int J Syst Evol Microbiol	10.1099/ijs.0.041939-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20451	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28537
#27014	IJSEM 1734 2013 ( DOI 10.1099/ijs.0.041939-0 , PubMed 22941296 )
#30683	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27014
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bartonella acomydis (DSM 28537, JCM 17706, KCTC 23907)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039543025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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