Name: Oerskovia turbata 27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2378

Type strain:

Species: Oerskovia turbata

Strain Designation: 27, AB 1476, N32

Culture col. no.: DSM 20577, ATCC 25835, CIP 100331, DSM 43880, JCM 3160, NCIB 10587, CCM 4093, CFBP 4266, CGMCC 4.1139, CIP 81.27, IAM 14867, IFM 10527, IFO 13506, IFO 15015, IMET 7405, IMSNU 21326, KCCM 12155, KCTC 9084, LMG 4072, NBRC 13506, NBRC 15015, NCIMB 10587, NCTC 11973, NRRL B-8019, RIA 1564, VKM Ac-1024

Strain history: KCC A-0160 <-- IMRU 689 <-- Statens Serum Inst., Copenhagen, Denmark; 891 (Ørskov's strain 27).

NCBI tax ID(s): 1322249 (strain), 1713 (species)

Other strains from Oerskovia turbata

O. turbata DSM 43878, ATCC 27403, IMET 7153, ...
O. turbata CCUG 17310
O. turbata E24-2Typ17, DSM 108861

Section

Oerskovia turbata 27 is a mesophilic human pathogen that was isolated from soil.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Oerskovia*
	Species	**Oerskovia turbata**
	Full Scientific Name (PNU)	Oerskovia turbata (Erikson 1954) Prauser et al. 1970 (Approved Lists 1980)

	Synonym	"Nocardia* turbata"*
	Synonym	Cellulomonas turbata

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

positive Confidence in %100

[Ref.: #18449]	Colony color	Beige (1001)
[Ref.: #18449]	Incubation period	10-14 days
[Ref.: #18449]	Cultivation medium used	ISP 2

[Ref.: #18449]	Colony color	Sulfur yellow (1016)
[Ref.: #18449]	Incubation period	10-14 days
[Ref.: #18449]	Cultivation medium used	ISP 3

[Ref.: #18449]	Colony color	Broom yellow (1032)
[Ref.: #18449]	Incubation period	10-14 days
[Ref.: #18449]	Cultivation medium used	ISP 4

[Ref.: #18449]	Colony color	Broom yellow (1032)
[Ref.: #18449]	Incubation period	10-14 days
[Ref.: #18449]	Cultivation medium used	ISP 5

[Ref.: #18449]	Colony color	Broom yellow (1032)
[Ref.: #18449]	Incubation period	10-14 days
[Ref.: #18449]	Cultivation medium used	ISP 6

[Ref.: #18449]	Colony color	Broom yellow (1032)
[Ref.: #18449]	Incubation period	10-14 days
[Ref.: #18449]	Cultivation medium used	ISP 7

[Ref.: #18449]	Multicellular complex forming ability	no
[Ref.: #18449]	Medium Name (multicellularity)	ISP 2

[Ref.: #18449]	Multicellular complex forming ability	no
[Ref.: #18449]	Medium Name (multicellularity)	ISP 3

[Ref.: #18449]	Multicellular complex forming ability	no
[Ref.: #18449]	Medium Name (multicellularity)	ISP 4

[Ref.: #18449]	Multicellular complex forming ability	no
[Ref.: #18449]	Medium Name (multicellularity)	ISP 5

[Ref.: #18449]	Multicellular complex forming ability	no
[Ref.: #18449]	Medium Name (multicellularity)	ISP 6

[Ref.: #18449]	Multicellular complex forming ability	no
[Ref.: #18449]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8927]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8927]

Culture medium growth

[Ref.: #8927]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #8927]

Culture medium composition

expand / minimize

[Ref.: #18449]

Culture medium

ISP 2

[Ref.: #18449]

Culture medium growth

[Ref.: #18449]

Culture medium composition

expand / minimize

[Ref.: #18449]

Culture medium

ISP 7

[Ref.: #18449]

Culture medium growth

[Ref.: #18449]

Culture medium composition

expand / minimize

[Ref.: #18449]

Culture medium

ISP 6

[Ref.: #18449]

Culture medium growth

[Ref.: #18449]

Culture medium composition

expand / minimize

[Ref.: #18449]

Culture medium

ISP 5

[Ref.: #18449]

Culture medium growth

[Ref.: #18449]

Culture medium composition

expand / minimize

[Ref.: #18449]

Culture medium

ISP 4

[Ref.: #18449]

Culture medium growth

[Ref.: #18449]

Culture medium composition

expand / minimize

[Ref.: #18449]

Culture medium

ISP 3

[Ref.: #18449]

Culture medium growth

[Ref.: #18449]

Culture medium composition

expand / minimize

[Ref.: #38084]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #38084]

Culture medium growth

[Ref.: #38084]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8927]	growth	30 °C
[Ref.: #18449]	optimum	30 °C
[Ref.: #38084]	growth	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #8927]	Temperature range	mesophilic
[Ref.: #18449]	Temperature range	mesophilic
[Ref.: #38084]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.758

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18449]		NaCl		maximum	7.5	%

[Ref.: #8927]	Murein short key	A11.45
[Ref.: #8927]	Murein types	A4alpha L-Lys-L-Thr-D-Asp

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(II,III-H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18449]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18449]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18449]	fructose ChEBI	+
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne, API 20E
[Ref.: #18449]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #18449]	mannitol ChEBI	-
[Ref.: #18449]	myo-inositol ChEBI	-
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18449]	raffinose ChEBI	-
[Ref.: #18449]	rhamnose ChEBI	-
[Ref.: #18449]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne, API 20E
[Ref.: #18449]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite
[Ref.: #68368]	acetoin ChEBI	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68368]	indole ChEBI	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne, API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne, API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18449]	38	-	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18449]	125	+	-	+	+	-	+	+	+	+	-	-	not determinedn.d.	+	+	+	+	+	+	+	+	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18449]	160	not determinedn.d.	+	+	+	-	+	+	-	-	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8927]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X79454 (>99% sequence identity) for Oerskovia from Microbeatlas

Aquatic Samples	1485
Soil Samples	3597
Animal Samples	1997
Plant Samples	3744
Total Samples	10823

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8927]	Pathogenicity (human)	yes, in single cases
[Ref.: #8927]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	C.turbata 16S rRNA gene	X83806	1451	ENA	1322249 tax ID	*
[Ref.: #20218]	Oerskovia turbata NCIMB 10587 16S rDNA	X79454	1510	ENA	1322249 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Oerskovia turbata NRRL B-8019	GCA_000718325	contig	GenBank	1713 tax ID
[Ref.: #67770]	Oerskovia turbata JCM3160	GCA_004121315	contig	GenBank	1713 tax ID
[Ref.: #66792]	Oerskovia turbata strain JCM3160	1713.5	wgs	PATRIC	1713 tax ID	*

[Ref.: #8927]	GC-content	70.5 mol%
[Ref.: #67770]	GC-content	72.2 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	72.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oerskovia turbata strain JCM12123 PATRIC: 1713.3
[Ref.: #69480]	anaerobic	no	99.692	no
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	spore-forming	no	99.758	no
[Ref.: #69480]	thermophile	no	99.753	no
[Ref.: #69480]	motile	no	72.005	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oerskovia turbata strain JCM12123 PATRIC: 1713.3
[Ref.: #69481]	spore-forming	no	81	no

Availability in culture collections External links

[Ref.: #8927]

Culture collection no.

DSM 20577, ATCC 25835, CIP 100331, DSM 43880, JCM 3160, NCIB 10587, CCM 4093, CFBP 4266, CGMCC 4.1139, CIP 81.27, IAM 14867, IFM 10527, IFO 13506, IFO 15015, IMET 7405, IMSNU 21326, KCCM 12155, KCTC 9084, LMG 4072, NBRC 13506, NBRC 15015, NCIMB 10587, NCTC 11973, NRRL B-8019, RIA 1564, VKM Ac-1024

[Ref.: #20218]

Associated Passport(s) in StrainInfo

52048, 52046, 149749, 52049, 52055, 52058

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation, Substrate Specificity, and Subunit Characterization of the Xylanosomes Produced by Oerskovia turbata JCM 3160.	Dou TY, Liu WJ, Chen J	Curr Microbiol	10.1007/s00284-020-01887-7	2020	*

References

#8927

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20577

#18449

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38084 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Oerskovia turbata strain JCM12123

Oerskovia turbata strain JCM12123

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