Name: Bartonella tribocorum DSM 28219
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23779

Type strain:

Species: Bartonella tribocorum

Culture col. no.: DSM 28219, CCUG 45778, CIP 105476, IBS 506

Strain history: CIP <- 1998, R. Heller, ULP, Strasbourg, France: strain IBS 506

NCBI tax ID(s): 382640 (strain), 85701 (species)

SI-ID 67572

CIP 105476, CCUG 45778, DSM 28219

Section

Bartonella tribocorum DSM 28219 is a mesophilic, Gram-negative animal pathogen that was isolated from blood of wild rats .

Gram-negative
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Bartonellaceae*
	Genus	*Bartonella*
	Species	**Bartonella tribocorum**
	Full Scientific Name (LPSN)	Bartonella tribocorum Heller et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #123582]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #123582]	Cell shape	rod-shaped

[Ref.: #123582]	Motility	no

[Ref.: #20449]	Type of hemolysis	gamma
[Ref.: #20449]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20449]

Culture medium

COLUMBIA BLOOD AGAR (DSMZ Medium 429)

[Ref.: #20449]

Culture medium growth

[Ref.: #20449]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20449]

Culture medium composition

expand / minimize

[Ref.: #35825]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #35825]

Culture medium growth

[Ref.: #35825]

Culture medium composition

expand / minimize

[Ref.: #123582]

Culture medium

CIP Medium 45

[Ref.: #123582]

Culture medium growth

[Ref.: #123582]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #20449]		growth	37 °C
[Ref.: #35825]		growth	37 °C
[Ref.: #123582]		growth	25-37 °C
[Ref.: #123582]	no	growth	10 °C
[Ref.: #123582]	no	growth	15 °C
[Ref.: #123582]	no	growth	41 °C
[Ref.: #123582]	no	growth	45 °C

[Ref.: #20449]	Temperature range	mesophilic
[Ref.: #35825]	Temperature range	mesophilic
[Ref.: #123582]	Temperature range	mesophilic
[Ref.: #123582]	Temperature range	psychrophilic
[Ref.: #123582]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #123582]		NaCl		growth	0-8	%
[Ref.: #123582]		NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123582]	esculin ChEBI	-	hydrolysis
[Ref.: #123582]	hippurate ChEBI	-	hydrolysis
[Ref.: #123582]	nitrate ChEBI	-	reduction
[Ref.: #123582]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123582]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #123582]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #123582]		acetoin ChEBI	-
[Ref.: #123582]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123582]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123582]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #20449]	catalase	-	1.11.1.6
[Ref.: #123582]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #20449]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123582]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123582]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123582]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123582]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123582]	oxidase	-
[Ref.: #123582]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123582]	tryptophan deaminase	-
[Ref.: #123582]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123582]	8729	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20449]	Sample type/isolated from	blood of wild rats (Rattus norvegicus)
[Ref.: #20449]	Host species	Rattus norvegicus
[Ref.: #20449]	Country	France
[Ref.: #20449]	Country ISO 3 Code	FRA
[Ref.: #20449]	Continent	Europe

[Ref.: #56920]	Sample type/isolated from	Wild rat blood
[Ref.: #56920]	Country	France
[Ref.: #56920]	Country ISO 3 Code	FRA
[Ref.: #56920]	Continent	Europe

[Ref.: #123582]	Sample type/isolated from	Wild rat, blood
[Ref.: #123582]	Country	France
[Ref.: #123582]	Country ISO 3 Code	FRA
[Ref.: #123582]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM260525 (>99% sequence identity) for Bartonella from Microbeatlas

Aquatic Samples	669
Soil Samples	187
Animal Samples	589
Plant Samples	52
Total Samples	1497

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20449]	Pathogenicity (animal)	yes
[Ref.: #20449]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123582]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20449]	Bartonella tribocorum CIP 105476 complete genome, type strain CIP 105476	AM260525	2619061	ENA	382640 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bartonella tribocorum CIP 105476 type strain:506 = CIP 105476	GCA_000196435	complete	GenBank	382640 tax ID	*
[Ref.: #66792]	Bartonella tribocorum CIP 105476	382640.5	complete	PATRIC	382640 tax ID	*
[Ref.: #66792]	Bartonella tribocorum CIP 105476 strain type strain:506 = CIP105476 strain type strain:506 = CIP 105476	382640.9	plasmid	PATRIC	382640 tax ID	*
[Ref.: #66792]	Bartonella tribocorum CIP 105476	641228478	complete	JGI IMG/M	382640 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bartonella tribocorum CIP 105476 type strain:506 = CIP 105476 NCBI: GCA_000196435.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bartonella tribocorum CIP 105476 type strain:506 = CIP 105476 NCBI: GCA_000196435.1
[Ref.: #69480]	motile	no	91.15	no
[Ref.: #69480]	flagellated	no	97.992	no
[Ref.: #69480]	gram-positive	no	98.242	no
[Ref.: #69480]	anaerobic	no	97.401	no
[Ref.: #69480]	aerobic	no	95.646	no
[Ref.: #69480]	halophile	no	59.994	no
[Ref.: #69480]	spore-forming	no	97.512	no
[Ref.: #69480]	thermophile	no	91.498	yes
[Ref.: #69480]	glucose-util	no	51.226	no
[Ref.: #69480]	glucose-ferment	no	75.556	no

Availability in culture collections External links

[Ref.: #20449]

Culture collection no.

DSM 28219, CCUG 45778, CIP 105476, IBS 506

[Ref.: #87811]

SI-ID 67572

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bartonella tribocorum sp. nov., a new Bartonella species isolated from the blood of wild rats.	Heller R, Riegel P, Hansmann Y, Delacour G, Bermond D, Dehio C, Lamarque F, Monteil H, Chomel B, Piemont Y	Int J Syst Bacteriol	10.1099/00207713-48-4-1333	1998	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20449

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28219

#35825 ; Curators of the CIP;
#56920 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45778

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87811

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID67572.1 )

#123582 Collection of Institut Pasteur ; Curators of the CIP; CIP 105476
* These data were automatically processed and therefore are not curated

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Bartonella tribocorum CIP 105476 type strain:506 = CIP 105476

Bartonella tribocorum CIP 105476 type strain:506 = CIP 105476

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