Name: Texcoconibacillus texcoconensis 13CC
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23769

Type strain:

Species: Texcoconibacillus texcoconensis

Strain Designation: 13CC

Culture col. no.: DSM 24696, JCM 17654

Strain history: L. Dendooven and E. Ruiz-Romero 13CC.

NCBI tax ID(s): 1095777 (species)

SI-ID 407084

DSM 24696

Section

Texcoconibacillus texcoconensis 13CC is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil, former lake Texcoco.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Texcoconibacillus*
	Species	**Texcoconibacillus texcoconensis**
	Full Scientific Name (LPSN)	Texcoconibacillus texcoconensis Ruiz-Romero et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30955]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30955]	Cell length	1.5 µm

[Ref.: #30955]	Cell width	0.45 µm

[Ref.: #30955]	Cell shape	rod-shaped

[Ref.: #30955]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %97.09

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21275]

Culture medium

NATRONOBACTERIA MEDIUM (DSMZ Medium 371)

[Ref.: #21275]

Culture medium growth

[Ref.: #21275]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21275]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21275]	growth	37 °C
[Ref.: #30955]	growth	25-45 °C
[Ref.: #30955]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #21275]	Temperature range	mesophilic
[Ref.: #30955]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30955]			optimum	8.75
[Ref.: #30955]			growth	6-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30955]

Oxygen tolerance

aerobe

[Ref.: #30955]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %98
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30955]		NaCl		growth	0-4.4	%
[Ref.: #30955]		NaCl		optimum	2.1	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30955]	glucose ChEBI	+	carbon source
[Ref.: #30955]	lactose ChEBI	+	carbon source
[Ref.: #30955]	mannose ChEBI	+	carbon source
[Ref.: #30955]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30955]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21275]	Sample type/isolated from	soil, former lake Texcoco
[Ref.: #21275]	Geographic location (country and/or sea, region)	Texcoco (19° 30' 52'' N 98° 59' 24'' W)
[Ref.: #21275]	Country	Mexico
[Ref.: #21275]	Country ISO 3 Code	MEX
[Ref.: #21275]	Continent	North America
[Ref.: #21275]	Geographic location	19.5144°/-98.9900°

[Ref.: #67770]	Sample type/isolated from	Soil of the former lake Texcoco
[Ref.: #67770]	Country	Mexico
[Ref.: #67770]	Country ISO 3 Code	MEX
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN571119 (>99% sequence identity) for Texcoconibacillus texcoconensis subclade from Microbeatlas

Aquatic Samples	52
Soil Samples	20
Animal Samples	20
Plant Samples	3
Total Samples	95

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21275]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21275]	Texcoconibacillus texcoconensis 16S ribosomal RNA gene, partial sequence	JN571119	1374	ENA	1095777 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Texcoconibacillus texcoconensis DSM 24696	GCA_014202575	scaffold	GenBank	1095777 tax ID	*
[Ref.: #66792]	Texcoconibacillus texcoconensis strain DSM 24696	1095777.3	wgs	PATRIC	1095777 tax ID	*
[Ref.: #66792]	Texcoconibacillus texcoconensis DSM 24696	2861573552	draft	JGI IMG/M	1095777 tax ID	*

[Ref.: #21275]	GC-content	37.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30955]	GC-content	37.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Texcoconibacillus texcoconensis DSM 24696 NCBI: GCA_014202575.1
[Ref.: #69481]	spore-forming	yes	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Texcoconibacillus texcoconensis DSM 24696 NCBI: GCA_014202575.1
[Ref.: #69480]	flagellated	yes	54.905	no
[Ref.: #69480]	gram-positive	yes	84.298	yes
[Ref.: #69480]	anaerobic	no	96.841	yes
[Ref.: #69480]	aerobic	yes	82.84	yes
[Ref.: #69480]	halophile	yes	83.835	no
[Ref.: #69480]	spore-forming	yes	92.719	yes
[Ref.: #69480]	glucose-util	yes	86.032	yes
[Ref.: #69480]	thermophile	no	86.898	no
[Ref.: #69480]	motile	yes	79.965	yes
[Ref.: #69480]	glucose-ferment	no	91.308	no

Availability in culture collections External links

[Ref.: #21275]

Culture collection no.

DSM 24696, JCM 17654

[Ref.: #87804]

SI-ID 407084

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Texcoconibacillus texcoconensis gen. nov., sp. nov., alkalophilic and halotolerant bacteria isolated from soil of the former lake Texcoco (Mexico).	Ruiz-Romero E, Coutino-Coutino MLA, Valenzuela-Encinas C, Lopez-Ramirez MP, Marsch R, Dendooven L	Int J Syst Evol Microbiol	10.1099/ijs.0.048447-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21275

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24696

#30955

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27285 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87804

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407084.1 )

#27285

IJSEM 3336 2013 ( DOI 10.1099/ijs.0.048447-0 , PubMed 23563229 )

* These data were automatically processed and therefore are not curated

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Texcoconibacillus texcoconensis DSM 24696

Texcoconibacillus texcoconensis DSM 24696

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