Name: Ureibacillus massiliensis 4400831
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23756

Type strain:

Species: Ureibacillus massiliensis

Strain Designation: 4400831

Culture col. no.: DSM 27596, CCUG 49529, CIP 108446, KCTC 13178

Strain history: CIP <- 2004, V. Roux, Timone Hosp., Marseille, France: strain 4400831

NCBI tax ID(s): 292806 (species)

SI-ID 297131

CCUG 49529, CIP 108446, LMG 24165, KCTC 13178, DSM 27596

Section

Ureibacillus massiliensis 4400831 is an aerobe, spore-forming, mesophilic human pathogen that was isolated from Human cephalorachidial liquid,54-yr-old man.

Gram-negative
motile
rod-shaped
spore-forming
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Ureibacillus*
	Species	**Ureibacillus massiliensis**
	Full Scientific Name (LPSN)	Ureibacillus massiliensis (Glazunova et al. 2006) Gupta and Patel 2020

	Synonym	Bacillus massiliensis
	Synonym	Lysinibacillus massiliensis

Information on morphological and physiological properties Morphology

[Ref.: #31658]	Gram stain	negative
[Ref.: #67771]	Gram stain	positive
[Ref.: #120852]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31658]	Cell length	1.5-4 µm

[Ref.: #31658]	Cell width	0.3-0.5 µm

[Ref.: #31658]	Cell shape	rod-shaped
[Ref.: #120852]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31658]	Motility	yes
[Ref.: #120852]	Motility	no
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.528

[Ref.: #67771]	Flagellum arrangement	peritrichous

[Ref.: #31658]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20433]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #20433]

Culture medium growth

[Ref.: #20433]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20433]

Culture medium composition

expand / minimize

[Ref.: #37295]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37295]

Culture medium growth

[Ref.: #37295]

Culture medium composition

expand / minimize

[Ref.: #120852]

Culture medium

CIP Medium 72

[Ref.: #120852]

Culture medium growth

[Ref.: #120852]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #20433]		growth	37 °C
[Ref.: #31658]		growth	25-45 °C
[Ref.: #31658]		optimum	30-37 °C
[Ref.: #37295]		growth	37 °C
[Ref.: #58599]		growth	30-37 °C
[Ref.: #67771]		growth	30-37 °C
[Ref.: #120852]		growth	22-37 °C
[Ref.: #120852]	no	growth	10 °C
[Ref.: #120852]	no	growth	45 °C
[Ref.: #120852]	no	growth	55 °C

[Ref.: #20433]	Temperature range	mesophilic
[Ref.: #31658]	Temperature range	mesophilic
[Ref.: #37295]	Temperature range	mesophilic
[Ref.: #58599]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #120852]	Temperature range	psychrophilic
[Ref.: #120852]	Temperature range	thermophilic

		pH
[Ref.: #31658]	optimum	7
[Ref.: #31658]	growth	7
[Ref.: #120852]	growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31658]	Oxygen tolerance	aerobe
[Ref.: #58599]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #120852]	Oxygen tolerance	obligate aerobe

[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #31658]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #31658]	NaCl		growth	5	%
[Ref.: #31658]	NaCl		optimum	5	%
[Ref.: #120852]	NaCl		growth	2-4	%
[Ref.: #120852]	NaCl	no	growth	0	%
[Ref.: #120852]	NaCl	no	growth	6	%
[Ref.: #120852]	NaCl	no	growth	8	%
[Ref.: #120852]	NaCl	no	growth	10	%

[Ref.: #31658]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31658]	acetate ChEBI	+	carbon source
[Ref.: #31658]	citrate ChEBI	+	carbon source
[Ref.: #120852]	citrate ChEBI	-	carbon source
[Ref.: #120852]	esculin ChEBI	-	hydrolysis
[Ref.: #120852]	hippurate ChEBI	-	hydrolysis
[Ref.: #31658]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #120852]	nitrate ChEBI	-	reduction
[Ref.: #120852]	nitrite ChEBI	-	reduction
[Ref.: #31658]	pyruvate ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #120852]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120852]		acetoin ChEBI	-
[Ref.: #120852]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #120852]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120852]	amylase	-
[Ref.: #120852]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120852]	caseinase	-	3.4.21.50
[Ref.: #31658]	catalase	+	1.11.1.6
[Ref.: #120852]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31658]	cytochrome oxidase	+	1.9.3.1
[Ref.: #120852]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #120852]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120852]	gelatinase	-
[Ref.: #120852]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #120852]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120852]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120852]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #120852]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120852]	tween esterase	-
[Ref.: #31658]	urease	+	3.5.1.5
[Ref.: #120852]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120852]	11196	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	alanine metabolism	89.66	26 of 29
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	purine metabolism	80.85	76 of 94
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	vitamin B12 metabolism	79.41	27 of 34
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	chorismate metabolism	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	lysine metabolism	64.29	27 of 42
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	degradation of sugar acids	60	15 of 25
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	allantoin degradation	55.56	5 of 9
[Ref.: #66794]	tryptophan metabolism	55.26	21 of 38
[Ref.: #66794]	glycolysis	52.94	9 of 17
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	lipid metabolism	51.61	16 of 31
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	degradation of pentoses	50	14 of 28
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	phenol degradation	35	7 of 20
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #58599]	Sample type/isolated from	Human cephalorachidial liquid,54-yr-old man
[Ref.: #58599]	Sampling date	2004-03-01
[Ref.: #58599]	Geographic location (country and/or sea, region)	Marseille,Timone hospital
[Ref.: #58599]	Country	France
[Ref.: #58599]	Country ISO 3 Code	FRA
[Ref.: #58599]	Continent	Europe

[Ref.: #20433]	Sample type/isolated from	cerebrospinal fluid, human
[Ref.: #20433]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #20433]	Country	France
[Ref.: #20433]	Country ISO 3 Code	FRA
[Ref.: #20433]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From Rachidian liquid
[Ref.: #67771]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #67771]	Country	France
[Ref.: #67771]	Country ISO 3 Code	FRA
[Ref.: #67771]	Continent	Europe

[Ref.: #120852]	Sample type/isolated from	Human, Rachidian liquid
[Ref.: #120852]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #120852]	Country	France
[Ref.: #120852]	Country ISO 3 Code	FRA
[Ref.: #120852]	Continent	Europe
[Ref.: #120852]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Cerebrospinal fluid
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY677116 (>99% sequence identity) for Lysinibacillus from Microbeatlas

Aquatic Samples
Soil Samples	6
Animal Samples	11
Plant Samples
Total Samples	17

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20433]	Pathogenicity (human)	yes, in single cases
[Ref.: #20433]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120852]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20433]	Bacillus massiliensis 16S ribosomal RNA gene, partial sequence	AY677116	1472	ENA	1211035 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529	GCA_002200855	contig	GenBank	1211035 tax ID	*
[Ref.: #66792]	Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529	GCA_000772965	contig	GenBank	1211035 tax ID	*
[Ref.: #66792]	Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529	1211035.3	wgs	PATRIC	1211035 tax ID	*
[Ref.: #66792]	Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 strain 4400831	1211035.4	wgs	PATRIC	1211035 tax ID	*
[Ref.: #66792]	Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529	2627853741	draft	JGI IMG/M	1211035 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 strain 4400831 PATRIC: 1211035.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 PATRIC: 1211035.3
[Ref.: #69480]	motile	yes	86.556	yes
[Ref.: #69480]	gram-positive	yes	84.97	no
[Ref.: #69480]	anaerobic	no	98.112	no
[Ref.: #69480]	aerobic	yes	89.379	yes
[Ref.: #69480]	halophile	no	76.649	no
[Ref.: #69480]	spore-forming	yes	94.995	yes
[Ref.: #69480]	thermophile	no	98.86	yes
[Ref.: #69480]	glucose-util	yes	83.889	no
[Ref.: #69480]	flagellated	yes	91.255	yes
[Ref.: #69480]	glucose-ferment	no	90.041	no

Availability in culture collections External links

[Ref.: #20433]

Culture collection no.

DSM 27596, CCUG 49529, CIP 108446, KCTC 13178

[Ref.: #87792]

SI-ID 297131

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysinibacillus chungkukjangi sp. nov., isolated from Chungkukjang, Korean fermented soybean food.	Kim SJ, Jang YH, Hamada M, Ahn JH, Weon HY, Suzuki K, Whang KS, Kwon SW	J Microbiol	10.1007/s12275-013-2664-1	2013	*
Phylogeny	Description of Lysinibacillus sinduriensis sp. nov., and transfer of Bacillus massiliensis and Bacillus odysseyi to the genus Lysinibacillus as Lysinibacillus massiliensis comb. nov. and Lysinibacillus odysseyi comb. nov. with emended description of the genus Lysinibacillus.	Jung MY, Kim JS, Paek WK, Styrak I, Park IS, Sin Y, Paek J, Park KA, Kim H, Kim HL, Chang YH	Int J Syst Evol Microbiol	10.1099/ijs.0.033837-0	2011	*
Phylogeny	Bacillus massiliensis sp. nov., isolated from cerebrospinal fluid.	Glazunova OO, Raoult D, Roux V	Int J Syst Evol Microbiol	10.1099/ijs.0.63982-0	2006	*
Phylogeny	Isolation and characterization of a novel piezotolerant bacterium Lysinibacillus yapensis sp. nov., from deep-sea sediment of the Yap Trench, Pacific Ocean.	Yu L, Tang X, Wei S, Qiu Y, Xu X, Xu G, Wang Q, Yang Q	J Microbiol	10.1007/s12275-019-8709-3	2019	*
Phylogeny	[Microbiological characteristics of a Lysinibacillus strain isolated from Populous euphratica].	Anwar N, Erkin R, Mamtimin H, Hamood B, Ismayi N, Abdukerim M, Rahman E	Wei Sheng Wu Xue Bao		2015	*
Phylogeny	Lysinibacillus manganicus sp. nov., isolated from manganese mining soil.	Liu H, Song Y, Chen F, Zheng S, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.050492-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20433

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27596

#31658

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27939 (see below)

#37295 ; Curators of the CIP;
#58599 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 49529

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87792

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297131.1 )

#120852 Collection of Institut Pasteur ; Curators of the CIP; CIP 108446

#27939

IJSEM 1485 2006 ( DOI 10.1099/ijs.0.63982-0 , PubMed 16825616 )

* These data were automatically processed and therefore are not curated

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Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 strain 4400831

Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529

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