Name: Marinococcus tarijensis SR-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23735

Type strain:

Species: Marinococcus tarijensis

Strain Designation: SR-1

Culture col. no.: DSM 28023, CECT 8130, LMG 26930

Strain history: <- CECT <- D. Guzmán, Universidad Mayor de San Simón, Cochabamba, Bolivia

NCBI tax ID(s): 1156576 (species)

SI-ID 379675

LMG 26930, CECT 8130, DSM 28023

Section

Marinococcus tarijensis SR-1 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from salt mine.

coccus-shaped
colony-forming
Gram-positive
motile
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Marinococcus*
	Species	**Marinococcus tarijensis**
	Full Scientific Name (LPSN)	Marinococcus tarijensis Balderrama-Subieta et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #23008]	Gram stain	positive

[Ref.: #23008]	Cell length	0.9-1.5 µm

[Ref.: #23008]	Cell shape	coccus-shaped

[Ref.: #23008]	Motility	yes

[Ref.: #23008]	Colony shape	circular
[Ref.: #23008]	Incubation period	14 days
[Ref.: #23008]	Cultivation medium used	TSA medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23008]

Culture medium

trypticase soy agar

[Ref.: #23008]

Culture medium growth

[Ref.: #20643]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20643]

Culture medium growth

[Ref.: #20643]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20643]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20643]	growth	28 °C
[Ref.: #23008]	growth	10.0-50.0 °C
[Ref.: #23008]	optimum	37.0-40.0 °C

[Ref.: #20643]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #23008]			optimum	7.6
[Ref.: #23008]			growth	7.0-8.3

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23008]

Oxygen tolerance

aerobe

[Ref.: #23008]

Ability of spore formation

[Ref.: #23008]

Halophily / tolerance level

halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23008]		NaCl		growth	3.0-20.0	%(w/v)
[Ref.: #23008]		NaCl		optimum	5.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23008]	2-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #23008]	2-oxopentanoate ChEBI	+	oxidation
[Ref.: #23008]	acetate ChEBI	+	oxidation
[Ref.: #23008]	alpha-lactose ChEBI	+	oxidation
[Ref.: #23008]	casein	-	hydrolysis
[Ref.: #23008]	cellobiose ChEBI	+	builds acid from
[Ref.: #23008]	cis-aconitate ChEBI	+	oxidation
[Ref.: #23008]	citrate ChEBI	+	oxidation
[Ref.: #23008]	D-alanine ChEBI	+	oxidation
[Ref.: #23008]	D-fructose ChEBI	+	builds acid from
[Ref.: #23008]	D-galactonic acid lactone ChEBI	+	oxidation
[Ref.: #23008]	D-galactose ChEBI	+	builds acid from
[Ref.: #23008]	D-galactose ChEBI	+	oxidation
[Ref.: #23008]	D-glucarate ChEBI	+	oxidation
[Ref.: #23008]	D-glucosaminic acid ChEBI	+	oxidation
[Ref.: #23008]	D-glucose ChEBI	+	builds acid from
[Ref.: #23008]	D-glucose ChEBI	+	oxidation
[Ref.: #23008]	D-glucose 6-phosphate ChEBI	+	oxidation
[Ref.: #23008]	D-psicose ChEBI	+	oxidation
[Ref.: #23008]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #23008]	D-sorbitol ChEBI	+	carbon source
[Ref.: #23008]	D-sorbitol ChEBI	+	oxidation
[Ref.: #23008]	D-xylose ChEBI	+	builds acid from
[Ref.: #23008]	esculin ChEBI	-	hydrolysis
[Ref.: #23008]	glucose ChEBI	-	fermentation
[Ref.: #23008]	glucuronamide ChEBI	+	oxidation
[Ref.: #23008]	glycerol ChEBI	+	builds acid from
[Ref.: #23008]	glycerol 1-phosphate ChEBI	+	oxidation
[Ref.: #23008]	glycine ChEBI	+	builds acid from
[Ref.: #23008]	glycyl-l-glutamate ChEBI	+	oxidation
[Ref.: #23008]	inosine ChEBI	+	oxidation
[Ref.: #23008]	L-alaninamide ChEBI	+	oxidation
[Ref.: #23008]	L-alanine ChEBI	+	oxidation
[Ref.: #23008]	L-alanylglycine ChEBI	+	oxidation
[Ref.: #23008]	L-arabinose ChEBI	+	builds acid from
[Ref.: #23008]	L-asparagine ChEBI	+	carbon source
[Ref.: #23008]	L-asparagine ChEBI	+	oxidation
[Ref.: #23008]	L-aspartate ChEBI	+	oxidation
[Ref.: #23008]	L-glutamate ChEBI	-	builds acid from
[Ref.: #23008]	L-glutamate ChEBI	+	oxidation
[Ref.: #23008]	L-glutamine ChEBI	+	builds acid from
[Ref.: #23008]	L-histidine ChEBI	+	carbon source
[Ref.: #23008]	L-histidine ChEBI	+	oxidation
[Ref.: #23008]	L-proline ChEBI	+	oxidation
[Ref.: #23008]	L-rhamnose ChEBI	+	carbon source
[Ref.: #23008]	L-rhamnose ChEBI	+	oxidation
[Ref.: #23008]	L-serine ChEBI	+	oxidation
[Ref.: #23008]	lactose ChEBI	+	builds acid from
[Ref.: #23008]	maltose ChEBI	+	builds acid from
[Ref.: #23008]	mannitol ChEBI	+	builds acid from
[Ref.: #23008]	melibiose ChEBI	+	oxidation
[Ref.: #23008]	methyl beta-D-glucopyranoside ChEBI	+	oxidation
[Ref.: #23008]	methyl pyruvate ChEBI	-	oxidation
[Ref.: #23008]	monomethyl succinate ChEBI	+	oxidation
[Ref.: #23008]	nitrate ChEBI	-	reduction
[Ref.: #23008]	raffinose ChEBI	+	oxidation
[Ref.: #23008]	sebacic acid ChEBI	-	oxidation
[Ref.: #23008]	starch ChEBI	-	hydrolysis
[Ref.: #23008]	starch ChEBI	+	builds acid from
[Ref.: #23008]	succinamate ChEBI	+	oxidation
[Ref.: #23008]	succinate ChEBI	+	oxidation
[Ref.: #23008]	sucrose ChEBI	-	builds acid from
[Ref.: #23008]	sucrose ChEBI	+	oxidation
[Ref.: #23008]	trehalose ChEBI	+	builds acid from
[Ref.: #23008]	turanose ChEBI	+	oxidation
[Ref.: #23008]	tween 20 ChEBI	-	hydrolysis
[Ref.: #23008]	tween 40 ChEBI	+	oxidation
[Ref.: #23008]	tween 80 ChEBI	-	hydrolysis
[Ref.: #23008]	tween 80 ChEBI	+	oxidation
[Ref.: #23008]	urea ChEBI	-	hydrolysis
[Ref.: #23008]	xylan ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #23008]	(-)-anisomycin ChEBI	no			yes	50	µg/mL
[Ref.: #23008]	ampicillin ChEBI	yes	10	µg
[Ref.: #23008]	aphidicolin ChEBI	no			yes	25	µg/mL
[Ref.: #23008]	aztreonam ChEBI	yes	30	µg
[Ref.: #23008]	bacitracin ChEBI	yes	10	Unit
[Ref.: #23008]	carbenicillin ChEBI	yes	100	µg
[Ref.: #23008]	cefoxitin ChEBI	yes	30	µg
[Ref.: #23008]	cephalothin ChEBI	yes	30	µg
[Ref.: #23008]	chloramphenicol ChEBI	yes	30	µg
[Ref.: #23008]	clindamycin ChEBI	yes	2	µg
[Ref.: #23008]	erythromycin ChEBI	yes	15	µg
[Ref.: #23008]	gentamicin ChEBI	yes	120	µg
[Ref.: #23008]	kanamycin ChEBI	no			yes	30	µg
[Ref.: #23008]	linezolid ChEBI	yes	30	µg
[Ref.: #23008]	meropenem ChEBI	yes	10	µg
[Ref.: #23008]	nalidixic acid ChEBI	no			yes	30	µg
[Ref.: #23008]	neomycin ChEBI	no			yes	30	µg
[Ref.: #23008]	novobiocin ChEBI	yes	30	µg
[Ref.: #23008]	nystatin ChEBI	no			yes	50	µg/mL
[Ref.: #23008]	penicillin g ChEBI	yes	10	Unit
[Ref.: #23008]	polymyxin b ChEBI	yes	300	Unit
[Ref.: #23008]	pravastatin ChEBI	no			yes	50	µg/mL
[Ref.: #23008]	rifampicin ChEBI	yes	5	µg
[Ref.: #23008]	simvastatin ChEBI	no			yes	50	µg/mL
[Ref.: #23008]	streptomycin ChEBI	yes	300	µg
[Ref.: #23008]	sulfisoxazole ChEBI	yes	250	µg
[Ref.: #23008]	tetracycline ChEBI	no			yes	30	µg
[Ref.: #23008]	vancomycin ChEBI	yes	30	µg
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #23008]		17	piperacillin ChEBI	yes	110	µg
[Ref.: #23008]		17	tazobactam ChEBI	yes	110	µg

	Metabolite	Production
[Ref.: #23008]	acetoin ChEBI	no
[Ref.: #23008]	exopolysaccharide ChEBI	no
[Ref.: #23008]	polyhydroxybutyrate ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #23008]		acetoin ChEBI	-
[Ref.: #23008]		glucose ChEBI		-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23008]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20643]	Sample type/isolated from	salt mine
[Ref.: #20643]	Geographic location (country and/or sea, region)	Tarija
[Ref.: #20643]	Country	Bolivia
[Ref.: #20643]	Country ISO 3 Code	BOL
[Ref.: #20643]	Continent	Middle and South America

[Ref.: #23008]	Sample type/isolated from	salt crystal from a salt mine
[Ref.: #23008]	Geographic location (country and/or sea, region)	Tarija
[Ref.: #23008]	Country	Bolivia
[Ref.: #23008]	Country ISO 3 Code	BOL
[Ref.: #23008]	Continent	Middle and South America
[Ref.: #23008]	Geographic location	-21.4669°/-64.1839°
[Ref.: #23008]	Enrichment culture	modified HM medium
[Ref.: #23008]	Enrichment culture composition	containing (%, w/v): NaCl, 17.8; MgSO4.7H2O, 0.1; CaCl2.2H2O, 0.036; KCl, 0.2; NaHCO3 , 0.006; NaBr,0.023; peptone, 0.5; yeast extract, 1.0; glucose, 0.1. pH was adjusted to 7.5 by using 3 M NaOH.
[Ref.: #23008]	Enrichment culture duration	7 days
[Ref.: #23008]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ413413 (>99% sequence identity) for Marinococcus from Microbeatlas

Aquatic Samples	1141
Soil Samples	176
Animal Samples	1431
Plant Samples	69
Total Samples	2817

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20643]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20643]	Marinococcus tarijensis strain SR-1 16S ribosomal RNA gene, partial sequence	JQ413413	1495	ENA	1156576 tax ID

[Ref.: #20643]

GC-content

48.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #20643]

Culture collection no.

DSM 28023, CECT 8130, LMG 26930

[Ref.: #87772]

SI-ID 379675

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinococcus salis sp., nov., a moderately halophilic bacterium isolated from a salt marsh.	Vishnuvardhan Reddy S, Thirumala M, Farooq M, Sasikala C, Venkata Ramana C	Arch Microbiol	10.1007/s00203-016-1263-z	2016	*
Phylogeny	Marinococcus tarijensis sp. nov., a moderately halophilic bacterium isolated from a salt mine.	Balderrama-Subieta A, Guzman D, Minegishi H, Echigo A, Shimane Y, Hatada Y, Quillaguaman J	Int J Syst Evol Microbiol	10.1099/ijs.0.045401-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20643

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28023

#23008

Andrea Balderrama-Subieta,Daniel Guzmán,Hiroaki Minegishi,Akinobu Echigo,Yasuhiro Shimane,Yuji Hatada,Jorge Quillaguam: Marinococcus tarijensis sp. nov., a moderately halophilic bacterium isolated from a salt mine. IJSEM 63: 3319 - 3323 2013 ( DOI 10.1099/ijs.0.045401-0 , PubMed 23504966 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87772

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379675.1 )

* These data were automatically processed and therefore are not curated

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