Bacillus solimangrovi (DSM 27083, JCM 18994, KCTC 33142)

Name: Bacillus solimangrovi (DSM 27083, JCM 18994, KCTC 33142)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23715

Type strain

Strain Designation GH2-4

Culture col. no. DSM 27083 JCM 18994 KCTC 33142 GH2-4

NCBI tax ID(s) 1305675

Special Collections DSMZ JCM KCTC

Links

Bacillus solimangrovi GH2-4 is a mesophilic prokaryote that was isolated from mangrove soil near a seashore.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399162

KCTC 33142,JCM 18994,DSM 27083

@ref 20215

Last LPSN update 2025-12-16 09:52:42

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species Bacillus solimangrovi

Full scientific name Bacillus solimangrovi Lee et al. 2014

BacDive ID	Other strains from **Bacillus solimangrovi** (1)	Type strain
23716	B. solimangrovi GH2-5, DSM 27084, JCM 18995, KCTC 33143

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20443	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20443	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: MK-7

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	sulfopterin metabolism	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	aspartate and asparagine metabolism	100	9 of 9
66794	vitamin K metabolism	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	lipoate biosynthesis	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	vitamin B1 metabolism	92.31	12 of 13
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	methionine metabolism	84.62	22 of 26
66794	leucine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	pyrimidine metabolism	82.22	37 of 45
66794	glycine betaine biosynthesis	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	hydrogen production	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	alanine metabolism	79.31	23 of 29
66794	citric acid cycle	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	phenylalanine metabolism	76.92	10 of 13
66794	purine metabolism	75.53	71 of 94
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	starch degradation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	arginine metabolism	66.67	16 of 24
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	tryptophan metabolism	60.53	23 of 38
66794	methylglyoxal degradation	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	lipid metabolism	58.06	18 of 31
66794	oxidative phosphorylation	57.14	52 of 91
66794	pentose phosphate pathway	54.55	6 of 11
66794	d-xylose degradation	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	degradation of hexoses	50	9 of 18
66794	pantothenate biosynthesis	50	3 of 6
66794	CMP-KDO biosynthesis	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	ethanol fermentation	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	Entner Doudoroff pathway	50	5 of 10
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	lipid A biosynthesis	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	degradation of pentoses	42.86	12 of 28
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	myo-inositol biosynthesis	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	vitamin B6 metabolism	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	glutathione metabolism	35.71	5 of 14
66794	phenol degradation	35	7 of 20
66794	arachidonic acid metabolism	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	degradation of sugar acids	32	8 of 25
66794	degradation of sugar alcohols	31.25	5 of 16
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	ascorbate metabolism	27.27	6 of 22
66794	cholesterol biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20443	mangrove soil near a seashore	Chuuk State, Weno Island (7° 25' 48'' N 151° 51' 28'' E)	Micronesia, Federated States of	FSM	Australia and Oceania	7.43	151.858 7.43/151.858
67770	Mangrove bed soil located on the seashore of Weno island in Chuuk State		Micronesia, Federated States of	FSM	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence KC616733 (>99% sequence identity) for Bacillus solimangrovi subclade from Microbeatlas

Aquatic Samples	154
Soil Samples	187
Animal Samples	496
Plant Samples	55
Total Samples	892

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20443	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM174242v1 assembly for Bacillus solimangrovi GH2-4	scaffold	GCA_001742425	2767802229	1305675	64.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20443	Bacillus solimangrovi strain GH2-4 16S ribosomal RNA gene, partial sequence	KC616733	1279		1305675

GC content

@ref	GC-content (mol%)	Method
20443	35.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus solimangrovi GH2-4
NCBI: GCA_001742425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	85.20	no
125439	motility	BacteriaNetⓘ	yes	72.00	no
125439	gram_stain	BacteriaNetⓘ	positive	73.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terrilactibacillus laevilacticus gen. nov., sp. nov., isolated from soil.	Prasirtsak B, Thongchul N, Tolieng V, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000954	2016
Phylogeny	Bacillus solimangrovi sp. nov., isolated from mangrove soil.	Lee GH, Rhee MS, Chang DH, Kwon KK, Bae KS, Yang SH, Kim BC	Int J Syst Evol Microbiol	10.1099/ijs.0.058230-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20443	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27083
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Bacillus solimangrovi (DSM 27083, JCM 18994, KCTC 33142)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001742425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media