Name: Oikeobacillus pervagus 8-4-E12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23712

Type strain:

Species: Oikeobacillus pervagus

Strain Designation: 8-4-E12

Culture col. no.: DSM 23947, LMG 27601

Strain history: <- U. Lechner, Martin-Luther-University Halle-Wittenberg, Inst. of Biology/Microbiology, Germany; 8-4-E12 <- K. Worm

NCBI tax ID(s): 1325931 (species)

SI-ID 388542

LMG 27601, DSM 23947

Section

Oikeobacillus pervagus 8-4-E12 is a mesophilic, Gram-positive, motile bacterium that was isolated from biowaste composting reactor.

Gram-positive
motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Oikeobacillus*
	Species	**Oikeobacillus pervagus**
	Full Scientific Name (LPSN)	Oikeobacillus pervagus (Kosowski et al. 2014) Narsing Rao et al. 2023

Synonym

Bacillus pervagus

Information on morphological and physiological properties Morphology

[Ref.: #31171]	Gram stain	positive

[Ref.: #31171]	Cell length	2.0-3.4 µm

[Ref.: #31171]	Cell width	0.8-1.3 µm

[Ref.: #31171]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20440]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #20440]

Culture medium growth

[Ref.: #20440]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20440]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20440]	growth	37 °C
[Ref.: #31171]	growth	20-50 °C
[Ref.: #31171]	optimum	45 °C

[Ref.: #20440]	Temperature range	mesophilic
[Ref.: #31171]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31171]			optimum	8
[Ref.: #31171]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31171]		NaCl		growth	02-07	%
[Ref.: #31171]		NaCl		optimum	2	%

[Ref.: #31171]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31171]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #31171]	glycerol ChEBI	+	carbon source
[Ref.: #31171]	malate ChEBI	+	carbon source
[Ref.: #31171]	nitrate ChEBI	+	reduction
[Ref.: #31171]	pyruvate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31171]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20440]	Sample type/isolated from	biowaste composting reactor
[Ref.: #20440]	Geographic location (country and/or sea, region)	federal state of Saxony, Bad Lausick
[Ref.: #20440]	Country	Germany
[Ref.: #20440]	Country ISO 3 Code	DEU
[Ref.: #20440]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Bioreactor	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HF952773 (>99% sequence identity) for Bacillus pervagus subclade from Microbeatlas

Aquatic Samples	129
Soil Samples	523
Animal Samples	530
Plant Samples	103
Total Samples	1285

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20440]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20440]	Bacillus pervagus partial 16S rRNA gene, strain 8-4-E12	HF952773	1463	ENA	1325931 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus pervagus DSM 23947	2926534574	draft	JGI IMG/M	1325931 tax ID	*

[Ref.: #20440]	GC-content	36.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31171]	GC-content	36.1 mol%

Availability in culture collections External links

[Ref.: #20440]

Culture collection no.

DSM 23947, LMG 27601

[Ref.: #87758]

SI-ID 388542

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus pervagus sp. nov. and Bacillus andreesenii sp. nov., isolated from a composting reactor.	Kosowski K, Schmidt M, Pukall R, Hause G, Kampfer P, Lechner U	Int J Syst Evol Microbiol	10.1099/ijs.0.054833-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20440

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23947

#31171

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27499 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87758

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID388542.1 )

#27499

IJSEM 88 2014 ( DOI 10.1099/ijs.0.054833-0 , PubMed 24021730 )

* These data were automatically processed and therefore are not curated

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