Name: Cellulomonas bogoriensis 69B4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2369

Type strain:

Species: Cellulomonas bogoriensis

Strain Designation: 69B4

Culture col. no.: DSM 16987, CIP 108683, JCM 30720

Strain history: CIP <- 2005, DSMZ <- B.E. Jones, Genencor Int., Leiden, The Netherlands: strain 69B4

NCBI tax ID(s): 1386082 (strain), 301388 (species)

SI-ID 265389

CIP 108683, DSM 16987

Special Collections

Section

Cellulomonas bogoriensis 69B4 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from sediment and water.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Cellulomonadaceae*
	Genus	*Cellulomonas*
	Species	**Cellulomonas bogoriensis**
	Full Scientific Name (LPSN)	Cellulomonas bogoriensis Jones et al. 2005

Synonym

"Actinotalea bogoriensis"

Information on morphological and physiological properties Morphology

[Ref.: #31481]	Gram stain	positive
[Ref.: #116830]	Gram stain	positive

[Ref.: #31481]	Cell length	0.6 µm

[Ref.: #31481]	Cell shape	rod-shaped
[Ref.: #116830]	Cell shape	rod-shaped

[Ref.: #31481]	Motility	yes
[Ref.: #116830]	Motility	no

[Ref.: #19745]	Colony color	Zinc yellow (1018)
[Ref.: #19745]	Incubation period	10-14 days
[Ref.: #19745]	Cultivation medium used	ISP 3

[Ref.: #19745]	Incubation period	10-14 days
[Ref.: #19745]	Cultivation medium used	ISP 2

[Ref.: #31481]

Pigment production

yes

[Ref.: #19745]	Multicellular complex forming ability	no
[Ref.: #19745]	Medium Name (multicellularity)	ISP 2

[Ref.: #19745]	Multicellular complex forming ability	no
[Ref.: #19745]	Medium Name (multicellularity)	ISP 3

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6592]

Culture medium

BOGORIELLA MEDIUM (DSMZ Medium 785)

[Ref.: #6592]

Culture medium growth

[Ref.: #6592]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6592]

Culture medium composition

expand / minimize

[Ref.: #19745]

Culture medium

ISP 2

[Ref.: #19745]

Culture medium growth

[Ref.: #19745]

Culture medium composition

expand / minimize

[Ref.: #19745]

Culture medium

ISP 3

[Ref.: #19745]

Culture medium growth

[Ref.: #19745]

Culture medium composition

expand / minimize

[Ref.: #36769]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #36769]

Culture medium growth

[Ref.: #36769]

Culture medium composition

expand / minimize

[Ref.: #116830]

Culture medium

CIP Medium 72

[Ref.: #116830]

Culture medium growth

[Ref.: #116830]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116830]

Culture medium

CIP Medium 6

[Ref.: #116830]

Culture medium growth

[Ref.: #116830]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6592]		growth	28 °C
[Ref.: #19745]		optimum	28 °C
[Ref.: #31481]		growth	20-37 °C
[Ref.: #31481]		optimum	33.5 °C
[Ref.: #36769]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #116830]		growth	25-45 °C
[Ref.: #116830]	no	growth	10 °C
[Ref.: #116830]	no	growth	15 °C

	pH	Kind of pH		pH
[Ref.: #31481]			optimum	9.5
[Ref.: #31481]			growth	6.0-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31481]	Oxygen tolerance	facultative anaerobe
[Ref.: #116830]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %99

	Salt	Tested relation		Salt conc.
[Ref.: #31481]	NaCl		growth	<8.0	%
[Ref.: #116830]	NaCl	no	growth	0	%
[Ref.: #116830]	NaCl	no	growth	2	%
[Ref.: #116830]	NaCl	no	growth	4	%
[Ref.: #116830]	NaCl	no	growth	6	%
[Ref.: #116830]	NaCl	no	growth	8	%
[Ref.: #116830]	NaCl	no	growth	10	%

[Ref.: #6592]	Murein short key	A21.04
[Ref.: #6592]	Murein types	A4ß L-Orn-D-Asp

[Ref.: #31481]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31481]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31481]	arabinose ChEBI	+	carbon source
[Ref.: #31481]	cellobiose ChEBI	+	carbon source
[Ref.: #116830]	citrate ChEBI	-	carbon source
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #116830]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #31481]	fructose ChEBI	+	carbon source
[Ref.: #31481]	gelatin ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #31481]	glucose ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #116830]	hippurate ChEBI	+	hydrolysis
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #31481]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #31481]	mannose ChEBI	+	carbon source
[Ref.: #116830]	nitrate ChEBI	-	reduction
[Ref.: #116830]	nitrate ChEBI	-	respiration
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #116830]	nitrite ChEBI	-	reduction
[Ref.: #31481]	rhamnose ChEBI	+	carbon source
[Ref.: #31481]	salicin ChEBI	+	carbon source
[Ref.: #31481]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #31481]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116830]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #116830]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116830]		acetoin ChEBI	-
[Ref.: #116830]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #116830]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116830]	amylase	+
[Ref.: #116830]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #116830]	caseinase	+	3.4.21.50
[Ref.: #31481]	catalase	+	1.11.1.6
[Ref.: #116830]	catalase	+	1.11.1.6
[Ref.: #116830]	cellulase	-	3.2.1.4
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116830]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #116830]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #31481]	gelatinase	+
[Ref.: #116830]	gelatinase	-
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #116830]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116830]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116830]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #116830]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116830]	oxidase	-
[Ref.: #116830]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116830]	tryptophan deaminase	-
[Ref.: #116830]	tween esterase	-
[Ref.: #116830]	urease	-	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19745]	287	+	-	-	-	-	-	+	-	+	+	-	not determinedn.d.	+	-	+	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19745]	569	not determinedn.d.	-	+	-	-	+	-	-	-	-	-	-	+	-	-	+	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	purine metabolism	72.34	68 of 94
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	glutamate and glutamine metabolism	64.29	18 of 28
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	degradation of pentoses	53.57	15 of 28
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	propionate fermentation	50	5 of 10
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	lysine metabolism	45.24	19 of 42
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	degradation of sugar acids	44	11 of 25
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	carotenoid biosynthesis	36.36	8 of 22
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	vitamin B6 metabolism	27.27	3 of 11
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
[Ref.: #66794]	polyamine pathway	21.74	5 of 23
[Ref.: #66794]	vitamin B12 metabolism	20.59	7 of 34
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6592]	Sample type/isolated from	sediment and water
[Ref.: #6592]	Geographic location (country and/or sea, region)	Lake Bogoria
[Ref.: #6592]	Country	Kenya
[Ref.: #6592]	Country ISO 3 Code	KEN
[Ref.: #6592]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	The littoral zone of Lake Bogoria
[Ref.: #67770]	Country	Kenya
[Ref.: #67770]	Country ISO 3 Code	KEN
[Ref.: #67770]	Continent	Africa

[Ref.: #116830]	Sample type/isolated from	Environment, Sediment and water
[Ref.: #116830]	Geographic location (country and/or sea, region)	Bogoria lake
[Ref.: #116830]	Country	Kenya
[Ref.: #116830]	Country ISO 3 Code	KEN
[Ref.: #116830]	Continent	Africa
[Ref.: #116830]	Isolation date	1988
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6592]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19745]	Biosafety level	1	Risk group (German classification)
[Ref.: #116830]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6592]	Cellulomonas bogoriensis 16S rRNA gene, type strain 69B4T	X92152	1458	GenBank ENA	301388 tax ID
[Ref.: #67770]	Cellulomonas bogoriaensis 16S rRNA gene, strain 69B4	AJ863164	1506	GenBank ENA	301388 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cellulomonas bogoriensis 69B4 = DSM 16987	GCA_000767165	contig	GenBank ENA	1386082 tax ID
[Ref.: #66792]	Cellulomonas bogoriensis 69B4 = DSM 16987	1386082.3	wgs	PATRIC	1386082 tax ID	*
[Ref.: #66792]	Cellulomonas bogoriensis 69B4	2651869835	draft	JGI IMG/M	1386082 tax ID	*

[Ref.: #6592]	GC-content	71.5 mol%
[Ref.: #67770]	GC-content	71.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cellulomonas bogoriensis 69B4 = DSM 16987 PATRIC: 1386082.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cellulomonas bogoriensis 69B4 = DSM 16987 PATRIC: 1386082.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.446	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.217	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	63.762	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	72.102	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	59	no

Availability in culture collections External links

[Ref.: #6592]

Culture collection no.

DSM 16987, CIP 108683, JCM 30720

[Ref.: #71924]

SI-ID 265389

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Cellulomonas carbonis T26(T) and comparative analysis of six Cellulomonas genomes.	Zhuang W, Zhang S, Xia X, Wang G	Stand Genomic Sci	10.1186/s40793-015-0096-8	2015	*
Phylogeny	Cellulomonas bogoriensis sp. nov., an alkaliphilic cellulomonad.	Jones BE, Grant WD, Duckworth AW, Schumann P, Weiss N, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.63646-0	2005	*

References

#6592

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16987

#19745

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31481

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27779 (see below)

#36769 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71924

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265389.1 )

#116830 Collection of Institut Pasteur ; Curators of the CIP; CIP 108683

#27779

IJSEM 1711 2005 ( DOI 10.1099/ijs.0.63646-0 , PubMed 16014506 )

* These data were automatically processed and therefore are not curated

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Cellulomonas bogoriensis 69B4 = DSM 16987

Cellulomonas bogoriensis 69B4 = DSM 16987

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