Name: Cellulomonas denverensis W6929
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2367

Type strain:

Species: Cellulomonas denverensis

Strain Designation: W6929

Culture col. no.: DSM 15764, ATCC BAA-788, NBRC 110783, CCUG 18431, JCM 14733, CIP 108914

Strain history: CIP <- 2005, J.M. Brown, CDC, Atlanta, USA: strain W6929

NCBI tax ID(s): 1305869 (strain), 264297 (species)

SI-ID 52577

CCUG 18431, ATCC BAA-788, DSM 15764, JCM 14733, CIP 108914

Special Collections

Other strains from Cellulomonas denverensis

Section

When using BacDive for research please cite our paper

Cellulomonas denverensis W6929 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from blood.

Gram-positive
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Cellulomonadaceae*
	Genus	*Cellulomonas*
	Species	**Cellulomonas denverensis**
	Full Scientific Name (LPSN)	Cellulomonas denverensis Brown et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #118915]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %99.8

[Ref.: #118915]	Cell shape	rod-shaped

[Ref.: #118915]	Motility	yes

[Ref.: #118915]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6104]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6104]

Culture medium growth

[Ref.: #6104]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6104]

Culture medium composition

expand / minimize

[Ref.: #34982]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #34982]

Culture medium growth

[Ref.: #34982]

Culture medium composition

expand / minimize

[Ref.: #118915]

Culture medium

CIP Medium 72

[Ref.: #118915]

Culture medium growth

[Ref.: #118915]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6104]		growth	28 °C
[Ref.: #34982]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #118915]		growth	15-45 °C
[Ref.: #118915]	negative	growth	10 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #118915]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.6

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #118915]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #118915]	citrate ChEBI	-	carbon source
[Ref.: #118915]	esculin ChEBI	+	hydrolysis
[Ref.: #118915]	hippurate ChEBI	+	hydrolysis
[Ref.: #118915]	nitrate ChEBI	+	reduction
[Ref.: #118915]	nitrate ChEBI	+	respiration
[Ref.: #118915]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #118915]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #118915]		acetoin ChEBI	-
[Ref.: #118915]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #118915]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #118915]	amylase	+
[Ref.: #118915]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118915]	caseinase	+	3.4.21.50
[Ref.: #118915]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #118915]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #118915]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #118915]	gelatinase	+/-
[Ref.: #118915]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #118915]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118915]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118915]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118915]	oxidase	+
[Ref.: #118915]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #118915]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118915]	tryptophan deaminase	-
[Ref.: #118915]	tween esterase	-
[Ref.: #118915]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118915]	11545	-	-	+	-	-	+	-	-	-	-	-	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6104]	Sample type/isolated from	blood
[Ref.: #6104]	Geographic location (country and/or sea, region)	Denver
[Ref.: #6104]	Country	USA
[Ref.: #6104]	Country ISO 3 Code	USA
[Ref.: #6104]	Continent	North America

[Ref.: #46835]	Sample type/isolated from	Human blood
[Ref.: #46835]	Sampling date	1972-05-01
[Ref.: #46835]	Geographic location (country and/or sea, region)	Colorado,Denver
[Ref.: #46835]	Country	USA
[Ref.: #46835]	Country ISO 3 Code	USA
[Ref.: #46835]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human blood
[Ref.: #67770]	Geographic location (country and/or sea, region)	Denver, CO
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #118915]	Sample type/isolated from	Human, Blood
[Ref.: #118915]	Geographic location (country and/or sea, region)	Denver, Colorado
[Ref.: #118915]	Country	United States of America
[Ref.: #118915]	Country ISO 3 Code	USA
[Ref.: #118915]	Continent	North America
[Ref.: #118915]	Isolation date	1975
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY501362 (>99% sequence identity) for Cellulomonas denverensis from Microbeatlas

Aquatic Samples	66
Soil Samples	235
Animal Samples	318
Plant Samples	188
Total Samples	807

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6104]	Pathogenicity (human)	yes, in single cases
[Ref.: #6104]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118915]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6104]	Cellulomonas denverensis 16S small subunit ribosomal RNA gene, partial sequence	AY501362	1422	GenBank ENA	264297 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cellulomonas denverensis ATCC BAA-788	GCA_012396125	contig	GenBank ENA	264297 tax ID
[Ref.: #66792]	Cellulomonas denverensis NBRC 110783	GCA_016862695	contig	GenBank ENA	264297 tax ID	*
[Ref.: #66792]	Cellulomonas denverensis JCM 14733	GCA_001315285	contig	GenBank ENA	1305869 tax ID	*
[Ref.: #66792]	Cellulomonas denverensis JCM 14733	1305869.3	wgs	PATRIC	1305869 tax ID	*
[Ref.: #66792]	Cellulomonas denverensis strain NBRC 110783	264297.6	wgs	PATRIC	264297 tax ID	*
[Ref.: #66792]	Cellulomonas denverensis JCM 14733	2734481980	draft	JGI IMG/M	1305869 tax ID	*

[Ref.: #6104]	GC-content	68.5 mol%
[Ref.: #67770]	GC-content	68.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulomonas denverensis JCM 14733 PATRIC: 1305869.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	78.705	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	83.975	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	80.837	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	61.034	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	87.458	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	73.583	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cellulomonas denverensis NBRC 110783 NCBI: GCA_016862695
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	81.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	79.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.6

Availability in culture collections External links

[Ref.: #6104]

Culture collection no.

DSM 15764, ATCC BAA-788, NBRC 110783, CCUG 18431, JCM 14733, CIP 108914

[Ref.: #71922]

SI-ID 52577

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenotypic and genetic characterization of clinical isolates of CDC coryneform group A-3: proposal of a new species of Cellulomonas, Cellulomonas denverensis sp. nov.	Brown JM, Frazier RP, Morey RE, Steigerwalt AG, Pellegrini GJ, Daneshvar MI, Hollis DG, McNeil MM	J Clin Microbiol	10.1128/JCM.43.4.1732-1737.2005	2005	*
Phylogeny	Cellulomonas triticagri sp. nov., isolated from the rhizosphere soil of wheat (Triticum aestivum L.).	Han C, Zhang Y, Yu B, Shan Q, Zhao J, Shi H, Tian Y, Zhang Y, Zhu C, Xiang W	Arch Microbiol	10.1007/s00203-022-03036-z	2022	*

References

#6104

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15764

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34982 ; Curators of the CIP;
#46835 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18431

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71922

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID52577.1 )

#118915 Collection of Institut Pasteur ; Curators of the CIP; CIP 108914

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Cellulomonas denverensis JCM 14733

Cellulomonas denverensis NBRC 110783

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