Name: Halioglobus pacificus S1-72
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23577

Type strain:

Species: Halioglobus pacificus

Strain Designation: S1-72

Culture col. no.: DSM 27932, KCTC 23430, NBRC 107742

Strain history: <- NBRC <- S. Yoshizawa, Inst. Molecular and Cellular Biosci., Univ. Tokyo, Japan; S1-72

NCBI tax ID(s): 930806 (species)

SI-ID 405203

DSM 27932

Section

Halioglobus pacificus S1-72 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

coccus-shaped
Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Halieaceae*
	Genus	*Halioglobus*
	Species	**Halioglobus pacificus**
	Full Scientific Name (LPSN)	Halioglobus pacificus Park et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30236]	Gram stain	negative

[Ref.: #30236]	Cell width	0.4 µm

[Ref.: #30236]	Cell shape	coccus-shaped

[Ref.: #30236]	Motility	no

[Ref.: #21237]

Incubation period

3-7 days

Multimedia content

[Ref.: #21237]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21237]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21237]

Culture medium growth

[Ref.: #21237]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21237]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21237]	growth	25 °C
[Ref.: #30236]	growth	15-30 °C
[Ref.: #30236]	optimum	22.5 °C

[Ref.: #21237]	Temperature range	mesophilic
[Ref.: #30236]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #30236]			optimum	7.5
[Ref.: #30236]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30236]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30236]		NaCl		growth	<5	%
[Ref.: #30236]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #30236]	fructose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30236]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #30236]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #30236]	ribose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #30236]	acid phosphatase	+	3.1.3.2
[Ref.: #30236]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #30236]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #30236]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21237]	23279	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21237]	Sample type/isolated from	seawater
[Ref.: #21237]	Geographic location (country and/or sea, region)	western North Pacific Ocean
[Ref.: #21237]	Country	Japan
[Ref.: #21237]	Country ISO 3 Code	JPN
[Ref.: #21237]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB602430 (>99% sequence identity) for Halioglobus pacificus subclade from Microbeatlas

Aquatic Samples	583
Soil Samples	14
Animal Samples	13
Plant Samples	2
Total Samples	612

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21237]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21237]	Halioglobus pacificus gene for 16S rRNA, partial sequence	AB602430	1428	ENA	930806 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halioglobus pacificus KCTC 23430	GCA_014652275	contig	GenBank	930806 tax ID	*
[Ref.: #66792]	Halioglobus pacificus strain KCTC 23430	930806.9	wgs	PATRIC	930806 tax ID	*

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GC-content

59.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halioglobus pacificus strain KCTC 23430 PATRIC: 930806.9
[Ref.: #69480]	motile	no	84.117	yes
[Ref.: #69480]	flagellated	no	93.424	yes
[Ref.: #69480]	gram-positive	no	98.307	yes
[Ref.: #69480]	anaerobic	no	98.909	no
[Ref.: #69480]	halophile	yes	81.688	no
[Ref.: #69480]	spore-forming	no	97.722	no
[Ref.: #69480]	glucose-util	yes	68.753	no
[Ref.: #69480]	aerobic	yes	93.719	yes
[Ref.: #69480]	thermophile	no	98.927	yes
[Ref.: #69480]	glucose-ferment	no	90.304	yes

Availability in culture collections External links

[Ref.: #21237]

Culture collection no.

DSM 27932, KCTC 23430, NBRC 107742

[Ref.: #87669]

SI-ID 405203

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sediminihaliea albiluteola gen. nov., sp. nov., a new member of the family Halieaceae, isolated from marine sediment.	Jiang S, Lian FB, Sun YY, Zhang XK, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004959	2021	*
Phylogeny	Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater.	Li SH, Song J, Kang I, Hwang J, Cho JC	J Microbiol	10.1007/s12275-020-0206-1	2020	*
Phylogeny	Halioglobus sediminis sp. nov., isolated from coastal sediment.	Han JR, Ye MQ, Wang C, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003366	2019	*
Phylogeny	Halioglobus japonicus gen. nov., sp. nov. and Halioglobus pacificus sp. nov., members of the class Gammaproteobacteria isolated from seawater.	Park S, Yoshizawa S, Inomata K, Kogure K, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.031443-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21237

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27932

#30236

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26578 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87669

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405203.1 )

#26578

IJSEM 1784 2012 ( DOI 10.1099/ijs.0.031443-0 , PubMed 21986723 )

* These data were automatically processed and therefore are not curated

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Halioglobus pacificus strain KCTC 23430

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