Gleimia europaea (DSM 26657, V2561)

Name: Gleimia europaea (DSM 26657, V2561)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23521

Type strain

Strain Designation V2561

Culture col. no. DSM 26657 V2561

NCBI tax ID(s) 66228

Special Collections DSMZ

History DSMZ <- A.E. Zautner, Institut für Medizinische Mikrobiologie. Universitätsmedizin Göttingen.; V2561

Links

Gleimia europaea V2561 is an anaerobe bacterium that was isolated from subcutaneous fistulae .

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 396995

DSM 26657

@ref 20215

Last LPSN update 2026-05-29 08:30:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Gleimia

Species Gleimia europaea

Full scientific name Gleimia europaea (Funke et al. 1997) Nouioui et al. 2018

Synonyms (1)

Actinomyces europaeus

BacDive ID	Other strains from **Gleimia europaea** (23)	Type strain
138197	G. europaea CIP 105308, CCUG 32789 A, ATCC 700353, LMG ... (type strain)
171	G. europaea DSM 11076, DMMZ 747
172	G. europaea DSM 11077, CCUG 35467, DMMZ 1113, CIP 105400
173	G. europaea DSM 11078, CCUG 35470, DMMZ 1284, CIP 105309
136407	G. europaea CIP 105401, DMMZ 2233
147002	G. europaea CCUG 32631
147071	G. europaea CCUG 32789 B
147315	G. europaea CCUG 33355
148019	G. europaea CCUG 34687
148494	G. europaea CCUG 35548, LMG 16600
148495	G. europaea CCUG 35549, LMG 16601
148496	G. europaea CCUG 35550, LMG 16902
148500	G. europaea CCUG 35554, LMG 16599
151835	G. europaea CCUG 45006
152495	G. europaea CCUG 46938
152818	G. europaea CCUG 47706
155125	G. europaea CCUG 56532 B
155277	G. europaea CCUG 57176
155838	G. europaea CCUG 59458
155849	G. europaea CCUG 59469
156236	G. europaea CCUG 60829
156240	G. europaea CCUG 60836
172712	G. europaea CIMB15, CIMB 04-8513, CRBIP17.15

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20245	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
20245	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
20245	positive	growth	37

Physiology and metabolism

Oxygen tolerance

20245

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.658

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	+		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	+		from API rID32A
68380	proline-arylamidase	+	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	+		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
20245	-	-	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	+/-	+	+	+	+	-	+	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Male

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
20245	subcutaneous fistulae (23 years old male with congenital femur hypoplasia)	Homo sapiens	Rostock	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20245	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3081142v1 assembly for Gleimia europaea DSM 26657	contig	GCA_030811425	66228.28	2923563042	66228	74.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20245	Actinomyces europaeus strain V2561 16S ribosomal RNA gene, partial sequence	EU138866	881		66228

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3081142v1 assembly for Gleimia europaea DSM 26657
NCBI: GCA_030811425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.55	no
125439	motility	BacteriaNetⓘ	no	83.43	no
125439	gram_stain	BacteriaNetⓘ	negative	57.03	no
125439	spore_formation	BacteriaNetⓘ	no	99.66	no

Literature

Title	Authors	Journal	DOI	Year
Draft genome sequence of Gleimia europaea DSM 26657.	Soghomonian A, Soghomonian M, Spunde A, Daum C, Gronow S, Goker M, Seshadri R, Maitra K.	Microbiol Resour Announc	10.1128/mra.00798-25	2025

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20245	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26657
#68380	Automatically annotated from API rID32A .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Gleimia europaea (DSM 26657, V2561)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030811425

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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