Neoroseomonas oryzicola (DSM 21423, KCTC 22478, NBRC 109439)

Name: Neoroseomonas oryzicola (DSM 21423, KCTC 22478, NBRC 109439)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23504

Type strain

Strain Designation YC6724

Culture col. no. DSM 21423 KCTC 22478 NBRC 109439 YC6724

NCBI tax ID(s) 535904

Special Collections DSMZ KCTC

History <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC6724 <- Z. Aslam <- YR Chung, Kyeongsang Univ.

Links

Neoroseomonas oryzicola YC6724 is an aerobe, Gram-negative bacterium that was isolated from rhizosphere of rice under conventional tillage.

Gram-negative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405671

LMG 31161,KCTC 22478,NBRC 109439,DSM 21423

@ref 20215

Last LPSN update 2026-02-09 11:23:45

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Neoroseomonas

Species Neoroseomonas oryzicola

Full scientific name Neoroseomonas oryzicola (Chung et al. 2015) Rai et al. 2022

Synonyms (1)

Roseomonas oryzicola

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	negative
125438	negative	98.31

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21099	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21099	positive	growth	28
67771	positive	growth	25-30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	97.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
21099	rhizosphere of rice (Oryza sativa L.) under conventional tillage	Oryza sativa	Jinju	Republic of Korea	KOR	Asia
67771	From rice field		Jinju	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU707562 (>99% sequence identity) for Roseomonas oryzicola from Microbeatlas

Aquatic Samples	595
Soil Samples	258
Animal Samples	89
Plant Samples	36
Total Samples	978

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21099	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1216313v1 assembly for Neoroseomonas oryzicola KCTC 22478	scaffold	GCA_012163135	535904.3	2894772417	535904	66.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21099	Neoroseomonas oryzicola strain YC6724 16S ribosomal RNA gene, partial sequence	EU707562	1451		535904

GC content

@ref	GC-content (mol%)	Method
21099	70.5	high performance liquid chromatography (HPLC)
67771	70.47

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neoroseomonas oryzicola KCTC 22478
NCBI: GCA_012163135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	75.10	no
125439	motility	BacteriaNetⓘ	no	55.40	no
125439	gram_stain	BacteriaNetⓘ	positive	68.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Roseomonas oryzicola KCTC 22478
NCBI: GCA_012163135.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.31	no
125438	anaerobic	anaerobicⓘ	no	88.47	no
125438	aerobic	aerobicⓘ	yes	82.05	yes
125438	spore-forming	spore-formingⓘ	no	84.98	no
125438	thermophilic	thermophileⓘ	no	95.48	yes
125438	flagellated	motile2+ⓘ	yes	65.32	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseomonas rubea sp. nov., isolated from rice paddy soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.005251	2022
Phylogeny	Roseomonas oryzicola sp. nov., isolated from the rhizosphere of rice (Oryza sativa L.).	Chung EJ, Yoon HS, Kim KH, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijsem.0.000656	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21099	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21423
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Neoroseomonas oryzicola (DSM 21423, KCTC 22478, NBRC 109439)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_012163135

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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