Name: Fretibacterium fastidiosum SGP1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23457

Type strain:

Species: Fretibacterium fastidiosum

Strain Designation: SGP1

Culture col. no.: DSM 25557, JCM 16858

Strain history: S. R. Vartoukian SGP1.

NCBI tax ID(s): 651822 (species)

SI-ID 401326

DSM 25557

Section

Fretibacterium fastidiosum SGP1 is an anaerobe, mesophilic, Gram-negative human pathogen that was isolated from subgingival plaque from a human with periodontitis.

Gram-negative
motile
ovoid-shaped
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Synergistota*
	Class	*Synergistia*
	Order	*Synergistales*
	Family	*Synergistaceae*
	Genus	*Fretibacterium*
	Species	**Fretibacterium fastidiosum**
	Full Scientific Name (LPSN)	Fretibacterium fastidiosum Vartoukian et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30647]	Gram stain	negative

[Ref.: #30647]	Cell length	7.5 µm

[Ref.: #30647]	Cell width	1.25 µm

[Ref.: #30647]	Cell shape	ovoid-shaped

[Ref.: #30647]	Motility	yes

[Ref.: #19245]

Incubation period

8-14 days

[Ref.: #30647]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19245]

Culture medium

CHOPPED MEAT MEDIUM FOR FERTIBACTERIUM SP. (DSMZ Medium 78c)

[Ref.: #19245]

Culture medium growth

[Ref.: #19245]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19245]

Culture medium composition

expand / minimize

[Ref.: #19245]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #19245]

Culture medium growth

[Ref.: #19245]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19245]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19245]	growth	37 °C
[Ref.: #30647]	growth	25-42 °C
[Ref.: #30647]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #19245]	Temperature range	mesophilic
[Ref.: #30647]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30647]			optimum	6.5
[Ref.: #30647]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19245]	Oxygen tolerance	anaerobe
[Ref.: #30647]	Oxygen tolerance	anaerobe

[Ref.: #30647]

Observation

aggregates in clumps

	Metabolite production	Metabolite	Production
[Ref.: #30647]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30647]		acid phosphatase	+	3.1.3.2
[Ref.: #30647]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19245]	Sample type/isolated from	subgingival plaque from a human with periodontitis
[Ref.: #19245]	Geographic location (country and/or sea, region)	London
[Ref.: #19245]	Country	United Kingdom
[Ref.: #19245]	Country ISO 3 Code	GBR
[Ref.: #19245]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Subgingival plaque from a human with periodontitis
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Subgingival plaque

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ149247 (>99% sequence identity) for Fretibacterium fastidiosum subclade from Microbeatlas

Aquatic Samples	51
Soil Samples	100
Animal Samples	6307
Plant Samples	32
Total Samples	6490

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19245]	Pathogenicity (human)	yes, in single cases
[Ref.: #19245]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19245]	Fretibacterium fastidiosum strain SGP1 16S ribosomal RNA gene, partial sequence	GQ149247	1440	ENA	651822 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fretibacterium fastidiosum SGP1	GCA_000210715	chromosome	GenBank	651822 tax ID	*
[Ref.: #66792]	Fretibacterium fastidiosum SGP1	650377983	complete	JGI IMG/M	651822 tax ID	*

[Ref.: #19245]	GC-content	63 mol%	sequence analysis
[Ref.: #30647]	GC-content	63 mol%
[Ref.: #67770]	GC-content	63 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #19245]

Culture collection no.

DSM 25557, JCM 16858

[Ref.: #87606]

SI-ID 401326

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fretibacterium fastidiosum gen. nov., sp. nov., isolated from the human oral cavity.	Vartoukian SR, Downes J, Palmer RM, Wade WG	Int J Syst Evol Microbiol	10.1099/ijs.0.041038-0	2012	*

References

#19245

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25557

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30647

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26978 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87606

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401326.1 )

#26978

IJSEM 458 2013 ( DOI 10.1099/ijs.0.041038-0 , PubMed 22493171 )

* These data were automatically processed and therefore are not curated

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