Name: Peptoniphilus tyrrelliae JC140
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23453

Type strain:

Species: Peptoniphilus tyrrelliae

Strain Designation: JC140

Culture col. no.: DSM 25694, CSUR P154, KCTC 15414

Strain history: <- DSM <- JC Lagier, Timone Hospital, Marseille, France, JC140 <- JC Lagier, URMITE, 27 bd Jean Moulin, 13385 Marseille Cedex 05, France

NCBI tax ID(s): 1465757 (species)

Other strains from Peptoniphilus tyrrelliae

P. tyrrelliae CCUG 59621, JCM 16893, ATCC BAA-2105, ... (type strain)

Section

Peptoniphilus tyrrelliae JC140 is an obligate anaerobe, mesophilic, coccus-shaped bacterium that was isolated from human feces.

coccus-shaped
mesophilic
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Peptoniphilus*
	Species	**Peptoniphilus tyrrelliae**
	Full Scientific Name (LPSN)	Peptoniphilus tyrrelliae Citron et al. 2013

Synonym

Peptoniphilus senegalensis

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #67771]	Cell shape	coccus-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19306]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #19306]

Culture medium growth

[Ref.: #19306]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19306]

Culture medium composition

expand / minimize

[Ref.: #19306]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

[Ref.: #19306]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19306]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19306]			growth	37 °C
[Ref.: #67771]			growth	37 °C

[Ref.: #19306]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19306]	Oxygen tolerance	obligate anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #67771]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #19306]	13240	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+	+	-	+	-	+	+	-	+/-
[Ref.: #19306]	12800	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	+	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19306]	Sample type/isolated from	human feces
[Ref.: #19306]	Geographic location (country and/or sea, region)	Dielmo
[Ref.: #19306]	Country	Senegal
[Ref.: #19306]	Country ISO 3 Code	SEN
[Ref.: #19306]	Continent	Africa
[Ref.: #19306]	Geographic location	13.7167°/-16.4167°

[Ref.: #67771]	Sample type/isolated from	From human feces
[Ref.: #67771]	Geographic location (country and/or sea, region)	Dielmo
[Ref.: #67771]	Country	Senegal
[Ref.: #67771]	Country ISO 3 Code	SEN
[Ref.: #67771]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF824803 (>99% sequence identity) for Peptoniphilus from Microbeatlas

Aquatic Samples	36
Soil Samples	11
Animal Samples	4463
Plant Samples	3
Total Samples	4513

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19306]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19306]	Peptoniphilus senegalensis JC140 16S ribosomal RNA gene, partial sequence	JF824803	1386	ENA	1033744 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Peptoniphilus senegalensis JC140 type strain: JC140	GCA_000321025	scaffold	GenBank	1033744 tax ID
[Ref.: #66792]	Peptoniphilus senegalensis JC140	2547132135	draft	JGI IMG/M	1033744 tax ID	*

[Ref.: #19306]

GC-content

32.2 mol%

Availability in culture collections External links

[Ref.: #19306]

Culture collection no.

DSM 25694, CSUR P154, KCTC 15414

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Non contiguous-finished genome sequence and description of Peptoniphilus senegalensis sp. nov.	Mishra AK, Lagier JC, Nguyen TT, Raoult D, Fournier PE	Stand Genomic Sci	10.4056/sigs.3366764	2013	*

References

#19306

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25694

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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