Name: Luminiphilus syltensis Ivo14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23448

Type strain:

Species: Luminiphilus syltensis

Strain Designation: Ivo14, Nor5-1B

Culture col. no.: DSM 22749, JCM 17770

Strain history: DSM 22749 <-- R. Amann NOR5-1B <-- I. Kosadinov Ivo14.

NCBI tax ID(s): 1341119 (species)

Section

Luminiphilus syltensis Ivo14 is a mesophilic bacterium that was isolated from oxic sediment layer.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Halieaceae*
	Genus	*Luminiphilus*
	Species	**Luminiphilus syltensis**
	Full Scientific Name (LPSN)	Luminiphilus syltensis Spring et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #19327]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19327]

Culture medium

CONGREGIBACTER (SYPHC) MEDIUM (DSMZ Medium 1115)

[Ref.: #19327]

Culture medium growth

[Ref.: #19327]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19327]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19327]			growth	28 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #19327]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19327]	Sample type/isolated from	oxic sediment layer
[Ref.: #19327]	Geographic location (country and/or sea, region)	Sylt island
[Ref.: #19327]	Country	Germany
[Ref.: #19327]	Country ISO 3 Code	DEU
[Ref.: #19327]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Top oxic layer of a muddy littoral sediment close to the island of Sylt
[Ref.: #67770]	Geographic location (country and/or sea, region)	North Sea
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU672849 (>99% sequence identity) for Luminiphilus syltensis subclade from Microbeatlas

Aquatic Samples	2103
Soil Samples	85
Animal Samples	105
Plant Samples	8
Total Samples	2301

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19327]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Luminiphilus syltensis NOR5-1B ctg_1109846220905, whole genome shotgun sequence	ACCY01000005	148281	ENA	565045 tax ID
[Ref.: #19327]	Luminiphilus syltensis NOR5-1B 16S ribosomal RNA gene, partial sequence	EU672849	1492	ENA	565045 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Luminiphilus syltensis NOR5-1B NOR5-1B	GCA_000158175	scaffold	GenBank	565045 tax ID
[Ref.: #66792]	Luminiphilus syltensis NOR5-1B	565045.6	wgs	PATRIC	565045 tax ID	*
[Ref.: #66792]	Luminiphilus syltensis NOR5-1B	647533250	draft	JGI IMG/M	565045 tax ID	*

[Ref.: #19327]	GC-content	57 mol%	sequence analysis
[Ref.: #67770]	GC-content	56.7 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #19327]

Culture collection no.

DSM 22749, JCM 17770

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans.	Spring S, Riedel T, Sproer C, Yan S, Harder J, Fuchs BM	BMC Microbiol	10.1186/1471-2180-13-118	2013	*
Metabolism	Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability.	Spring S, Riedel T	BMC Microbiol	10.1186/1471-2180-13-117	2013	*

References

#19327

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22749

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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