Luminiphilus syltensis (DSM 22749, JCM 17770, Ivo14)

Name: Luminiphilus syltensis (DSM 22749, JCM 17770, Ivo14)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23448

Type strain

Strain Designation Ivo14, Nor5-1B

Culture col. no. DSM 22749 JCM 17770 Ivo14 Nor5-1B

NCBI tax ID(s) 1341119

Special Collections DSMZ JCM

History DSMZ <- B. Fuchs, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; Ivo14 <- J. Harder and I. Kostadinov; {2007} JCM <-- DSM 22749 <-- R. Amann NOR5-1B <-- I. Kosadinov Ivo14.

Links

Luminiphilus syltensis Ivo14 is a bacterium that was isolated from oxic sediment layer.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403108

JCM 17770,DSM 22749

@ref 20215

Last LPSN update 2026-05-29 08:30:26

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cellvibrionales

Family Halieaceae

Genus Luminiphilus

Species Luminiphilus syltensis

Full scientific name Luminiphilus syltensis Spring et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100
125439	negative	98.112

Colony morphology

19327

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19327	CONGREGIBACTER (SYPHC) MEDIUM (DSMZ Medium 1115)		Medium recipe at MediaDive	Name: CONGREGIBACTER (SYPHC) MEDIUM (DSMZ Medium 1115) Composition: Sea Salt 34.965 g/l HEPES 2.4975 g/l Na-pyruvate 1.0989 g/l Yeast extract 0.999001 g/l NH4Cl 0.0999001 g/l KH2PO4 0.04995 g/l L-Cysteine HCl x H2O 0.03996 g/l L-Histidine 0.03996 g/l MgSO4 x 7 H2O 0.02997 g/l NaCl 0.00999001 g/l MnSO4 x H2O 0.00499501 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.0027972 g/l CoCl2 x 6 H2O 0.0017982 g/l ZnSO4 x 7 H2O 0.0017982 g/l CaCl2 x 2 H2O 0.000999001 g/l FeSO4 x 7 H2O 0.000999001 g/l AlK(SO4)2 x 12 H2O 0.00017982 g/l Pyridoxine hydrochloride 0.00014985 g/l CuSO4 x 5 H2O 9.99001e-05 g/l H3BO3 9.99001e-05 g/l Nicotinic acid 9.99001e-05 g/l Thiamine-HCl x 2 H2O 9.99001e-05 g/l Na2SeO4 9.99001e-05 g/l Na2WO4 x 2 H2O 9.99001e-05 g/l Na2MoO4 x 2 H2O 9.99001e-05 g/l Calcium pantothenate 4.995e-05 g/l Vitamin B12 4.995e-05 g/l p-Aminobenzoic acid 3.996e-05 g/l D-(+)-biotin 9.99001e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19327	positive	growth	28
67770	positive	growth	25

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		94.657
125439		99.701

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19327	oxic sediment layer	Sylt island	Germany	DEU	Europe
67770	Top oxic layer of a muddy littoral sediment close to the island of Sylt	North Sea	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence EU672849 (>99% sequence identity) for Luminiphilus syltensis subclade from Microbeatlas

Aquatic Samples	2103
Soil Samples	85
Animal Samples	105
Plant Samples	8
Total Samples	2301

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19327	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM15817v1 assembly for Luminiphilus syltensis NOR5-1B	scaffold	GCA_000158175	565045.6	647533250	565045	72.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19327	Luminiphilus syltensis NOR5-1B 16S ribosomal RNA gene, partial sequence	EU672849	1492		565045

GC content

@ref	GC-content (mol%)	Method
19327	57	sequence analysis
67770	56.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM15817v1 assembly for Luminiphilus syltensis NOR5-1B
NCBI: GCA_000158175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	98.11	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.86	no
125439	motility	BacteriaNetⓘ	yes	78.51	no
125439	spore_formation	BacteriaNetⓘ	no	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Luminiphilus syltensis NOR5-1B
PATRIC: 565045.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	91.05	no
125438	spore-forming	spore-formingⓘ	no	94.66	no
125438	aerobic	aerobicⓘ	yes	75.69	no
125438	thermophilic	thermophileⓘ	no	96.32	yes
125438	flagellated	motile2+ⓘ	no	69.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability.	Spring S, Riedel T	BMC Microbiol	10.1186/1471-2180-13-117	2013
Phylogeny	Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans.	Spring S, Riedel T, Sproer C, Yan S, Harder J, Fuchs BM	BMC Microbiol	10.1186/1471-2180-13-118	2013

References

#19327	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22749
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Luminiphilus syltensis (DSM 22749, JCM 17770, Ivo14)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000158175

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media