Name: Demequina oxidasica YM05-1041
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23446

Type strain:

Species: Demequina oxidasica

Strain Designation: YM05-1041

Culture col. no.: DSM 27405, KCTC 19746, MBIC 08346, NBRC 106264

Strain history: <- A Katsuta, MBIC <- Y Matsuo

NCBI tax ID(s): 676199 (species)

SI-ID 406917

DSM 27405

Section

Demequina oxidasica YM05-1041 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from seagrass Zostera marina.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Demequinaceae*
	Genus	*Demequina*
	Species	**Demequina oxidasica**
	Full Scientific Name (LPSN)	Demequina oxidasica Ue et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.587

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19118]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #19118]

Culture medium growth

[Ref.: #19118]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19118]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19118]			growth	28 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #19118]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #67771]

Observation

quinones: DMK-9(H4)(major), DMK-8(H4), DMK-9(H6)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19118]	Sample type/isolated from	seagrass Zostera marina
[Ref.: #19118]	Host species	Zostera marina
[Ref.: #19118]	Geographic location (country and/or sea, region)	Hokkaido, Muroran
[Ref.: #19118]	Country	Japan
[Ref.: #19118]	Country ISO 3 Code	JPN
[Ref.: #19118]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sea grass `Zostera marina`
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Aquatic plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB522640 (>99% sequence identity) for Demequina from Microbeatlas

Aquatic Samples	1680
Soil Samples	1298
Animal Samples	2103
Plant Samples	180
Total Samples	5261

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19118]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19118]	Demequina oxidasica gene for 16S rRNA, partial sequence	AB522640	1443	ENA	676199 tax ID
[Ref.: #20218]	Demequina oxidasica gene for 16S rRNA, partial sequence	AB639019	1476	ENA	676199 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Demequina oxidasica NBRC 106264	GCA_000975115	scaffold	GenBank	676199 tax ID	*
[Ref.: #66792]	Demequina oxidasica strain NBRC 106264	676199.3	wgs	PATRIC	676199 tax ID	*
[Ref.: #66792]	Demequina oxidasica NBRC 106264	2690315952	draft	JGI IMG/M	676199 tax ID	*

[Ref.: #19118]

GC-content

65.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Demequina oxidasica NBRC 106264 NCBI: GCA_000975115.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Demequina oxidasica NBRC 106264 NCBI: GCA_000975115.1
[Ref.: #69480]	motile	no	89.179	no
[Ref.: #69480]	flagellated	no	98.044	no
[Ref.: #69480]	gram-positive	yes	95.643	yes
[Ref.: #69480]	anaerobic	no	98.476	yes
[Ref.: #69480]	aerobic	yes	56.172	no
[Ref.: #69480]	halophile	no	86.241	no
[Ref.: #69480]	spore-forming	no	92.536	no
[Ref.: #69480]	glucose-util	yes	84.298	no
[Ref.: #69480]	thermophile	no	98.751	yes
[Ref.: #69480]	glucose-ferment	no	68.131	no

Availability in culture collections External links

[Ref.: #19118]

Culture collection no.

DSM 27405, KCTC 19746, MBIC 08346, NBRC 106264

[Ref.: #87598]

SI-ID 406917

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Demequina globuliformis sp. nov., Demequina oxidasica sp. nov. and Demequina aurantiaca sp. nov., actinobacteria isolated from marine environments, and proposal of Demequinaceae fam. nov.	Ue H, Matsuo Y, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.024299-0	2010	*

References

#19118

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27405

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87598

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406917.1 )

* These data were automatically processed and therefore are not curated

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Demequina oxidasica NBRC 106264

Demequina oxidasica NBRC 106264

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