Name: Demequina aurantiaca YM12-102
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23444

Type strain:

Species: Demequina aurantiaca

Strain Designation: YM12-102

Culture col. no.: DSM 27402, KCTC 19745, MBIC 08347, NBRC 106265

Strain history: <- A Katsuta, MBIC <- Y Matsuo

NCBI tax ID(s): 676200 (species)

SI-ID 399697

DSM 27402

Section

Demequina aurantiaca YM12-102 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from seaweed.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Demequinaceae*
	Genus	*Demequina*
	Species	**Demequina aurantiaca**
	Full Scientific Name (LPSN)	Demequina aurantiaca Ue et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.16

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19116]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #19116]

Culture medium growth

[Ref.: #19116]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19116]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19116]			growth	28 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #19116]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #67771]

Observation

quinones: DMK-9(H4)(major), DMK-8(H4), DMK-9(H6)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19116]	Sample type/isolated from	seaweed
[Ref.: #19116]	Geographic location (country and/or sea, region)	Shizuoka, Lake Hamana
[Ref.: #19116]	Country	Japan
[Ref.: #19116]	Country ISO 3 Code	JPN
[Ref.: #19116]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seaweed
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Aquatic plant
#Environmental	#Aquatic	-
#Host	#Algae	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB522641 (>99% sequence identity) for Demequina from Microbeatlas

Aquatic Samples	1680
Soil Samples	1298
Animal Samples	2103
Plant Samples	180
Total Samples	5261

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19116]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19116]		AB52264		ENA
[Ref.: #20218]	Demequina aurantiaca gene for 16S rRNA, partial sequence	AB522641	1444	ENA	676200 tax ID	*
[Ref.: #20218]	Demequina aurantiaca gene for 16S rRNA, partial sequence	AB639020	1476	ENA	676200 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Demequina aurantiaca NBRC 106265	GCA_000975135	scaffold	GenBank	676200 tax ID	*
[Ref.: #66792]	Demequina aurantiaca strain NBRC 106265	676200.3	wgs	PATRIC	676200 tax ID	*
[Ref.: #66792]	Demequina aurantiaca NBRC 106265	2660238532	draft	JGI IMG/M	676200 tax ID	*

[Ref.: #19116]

GC-content

65.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Demequina aurantiaca NBRC 106265 NCBI: GCA_000975135.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Demequina aurantiaca NBRC 106265 NCBI: GCA_000975135.1
[Ref.: #69480]	motile	no	88.992	no
[Ref.: #69480]	flagellated	no	98.131	no
[Ref.: #69480]	gram-positive	yes	94.613	yes
[Ref.: #69480]	anaerobic	no	98.921	no
[Ref.: #69480]	aerobic	yes	54.647	no
[Ref.: #69480]	halophile	no	87.711	no
[Ref.: #69480]	spore-forming	no	91.482	no
[Ref.: #69480]	glucose-util	yes	84.12	no
[Ref.: #69480]	thermophile	no	98.354	no
[Ref.: #69480]	glucose-ferment	no	68.182	no

Availability in culture collections External links

[Ref.: #19116]

Culture collection no.

DSM 27402, KCTC 19745, MBIC 08347, NBRC 106265

[Ref.: #87596]

SI-ID 399697

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Demequina globuliformis sp. nov., Demequina oxidasica sp. nov. and Demequina aurantiaca sp. nov., actinobacteria isolated from marine environments, and proposal of Demequinaceae fam. nov.	Ue H, Matsuo Y, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.024299-0	2010	*

References

#19116

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27402

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87596

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399697.1 )

* These data were automatically processed and therefore are not curated

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Demequina aurantiaca NBRC 106265

Demequina aurantiaca NBRC 106265

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