Cloacibacillus porcorum (DSM 25858, CCUG 62631, KCTC 15364)

Name: Cloacibacillus porcorum (DSM 25858, CCUG 62631, KCTC 15364)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23440

Type strain

Strain Designation CL-84

Culture col. no. DSM 25858 CCUG 62631 KCTC 15364 CL-84

NCBI tax ID(s) 1197717

Special Collections DSMZ CCUG KCTC Literature strains

History DSMZ <- T. Looft, USDA-ARS-NADC, Ames, Iowa, USA; CL-84 <- T. Looft {2010} KCTC <- CCUG <- T Looft, USDA-ARS-NADC, Ames, Iowa, USA, CL-84 <- T Looft

Links

Cloacibacillus porcorum CL-84 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from healthy pig cecum mucosa.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406813

KCTC 15364,DSM 25858,CCUG 62631

@ref 20215

Last LPSN update 2026-05-29 08:30:26

Domain Bacteria

Phylum Synergistota

Class Synergistia

Order Synergistales

Family Synergistaceae

Genus Cloacibacillus

Species Cloacibacillus porcorum

Full scientific name Cloacibacillus porcorum Looft et al. 2013

BacDive ID	Other strains from **Cloacibacillus porcorum** (2)	Type strain
149936	C. porcorum CCUG 38714
159583	C. porcorum COR2-251-APC-3, DSM 105753

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
30804	negative	4.25 µm	1 µm	rod-shaped
67771				rod-shaped
67771				curved-shaped
67771	negative

Colony morphology

62859

Incubation period2 days

Pigmentation

30804

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19338	WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l D-Glucose 5.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19338	positive	growth	37
30804	positive	growth	20-45
30804	positive	optimum	39
62859	positive	growth	37
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
30804	positive	optimum	6.5
30804	positive	growth	04-08	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
19338	anaerobe
30804	anaerobe
62859	anaerobe
67771	anaerobe
125439	obligate anaerobe	98.97

Spore formation

@ref	Spore formation	Confidence
30804
125439		98.207

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30804	NaCl	positive	growth	0-1.4 %
30804	NaCl	positive	optimum	0.7 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30804	29016 ChEBI	arginine	+	carbon source
30804	16296 ChEBI	D-tryptophan	+	carbon source
30804	33984 ChEBI	fucose	+	carbon source
30804	28260 ChEBI	galactose	+	carbon source
30804	27570 ChEBI	histidine	+	carbon source
30804	37684 ChEBI	mannose	+	carbon source
30804	506227 ChEBI	N-acetylglucosamine	+	carbon source
30804	26271 ChEBI	proline	+	carbon source
30804	17822 ChEBI	serine	+	carbon source
30804	26986 ChEBI	threonine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30804	acid phosphatase	+	3.1.3.2
30804	alkaline phosphatase	+	3.1.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body-Site	#Gastrointestinal tract	#Large intestine

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
19338	healthy pig cecum mucosa		Iowa, Ames	USA	USA	North America
62859	Swine intestinal tract,caecal mucosa	2010-01-01	Iowa,Ames	USA	USA	North America
67771	From mucosal lining of a pig caecum in Ames		Iowa	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence NR_109636 (>99% sequence identity) for Cloacibacillus porcorum subclade from Microbeatlas

Aquatic Samples	97
Soil Samples	44
Animal Samples	5007
Plant Samples	8
Total Samples	5156

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19338	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM170104v1 assembly for Cloacibacillus porcorum CL-84	complete	GCA_001701045	1197717.12	2718217834	1197717	97.54

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19338	Cloacibacillus porcorum strain CL-84 16S ribosomal RNA gene, partial sequence	JQ809697	1447		1197717
67771	Cloacibacillus porcorum strain CL-84 16S ribosomal RNA, partial sequence	NR_109636	1447		1197717

GC content

@ref	GC-content (mol%)	Method
19338	55.1	sequence analysis
30804	55.1
67771	55.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM170104v1 assembly for Cloacibacillus porcorum CL-84
BV-BRC: 1197717.12

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.97	no
125439	motility	BacteriaNetⓘ	no	70.52	no
125439	gram_stain	BacteriaNetⓘ	negative	84.34	no
125439	spore_formation	BacteriaNetⓘ	no	98.21	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cloacibacillus porcorum CL-84
NCBI: GCA_001701045.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	83.23	yes
125438	anaerobic	anaerobicⓘ	yes	89.64	yes
125438	aerobic	aerobicⓘ	no	92.69	yes
125438	spore-forming	spore-formingⓘ	no	77.90	yes
125438	thermophilic	thermophileⓘ	no	84.58	no
125438	flagellated	motile2+ⓘ	no	83.69	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cloacibacillus porcorum sp. nov., a mucin-degrading bacterium from the swine intestinal tract and emended description of the genus Cloacibacillus.	Looft T, Levine UY, Stanton TB	Int J Syst Evol Microbiol	10.1099/ijs.0.044719-0	2012

References

#19338	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25858
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27135	IJSEM 1960 2013 ( DOI 10.1099/ijs.0.044719-0 , PubMed 23041639 )
#30804	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27135
#62859	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62631
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cloacibacillus porcorum (DSM 25858, CCUG 62631, KCTC 15364)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001701045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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