Name: Phenylobacterium koreense Slu-01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2343

Type strain:

Species: Phenylobacterium koreense

Strain Designation: Slu-01

Culture col. no.: DSM 17809, IAM 15119, JCM 21577, KCTC 12206, NBRC 102285

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 266125 (species)

SI-ID 232743

KCTC 12206, IAM 15119, DSM 17809, JCM 21577, NBRC 102285

Section

Phenylobacterium koreense Slu-01 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from activated sludge.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Phenylobacterium*
	Species	**Phenylobacterium koreense**
	Full Scientific Name (LPSN)	Phenylobacterium koreense Aslam et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31497]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #31497]	Cell length	1.5 µm

[Ref.: #31497]	Cell width	0.85 µm

[Ref.: #31497]	Cell shape	rod-shaped

[Ref.: #31497]	Motility	no

[Ref.: #31497]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7200]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7200]

Culture medium growth

[Ref.: #7200]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7200]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7200]	growth	30 °C
[Ref.: #31497]	growth	20-37 °C
[Ref.: #31497]	optimum	29 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #7200]	Temperature range	mesophilic
[Ref.: #31497]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31497]			optimum	7.5
[Ref.: #31497]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31497]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31497]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31497]		NaCl		growth	0-2	%

[Ref.: #31497]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: Q-10
[Ref.: #67771]	Observation	quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31497]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #31497]	4-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #31497]	acetate ChEBI	+	carbon source
[Ref.: #31497]	adipate ChEBI	+	carbon source
[Ref.: #31497]	decanoate ChEBI	+	carbon source
[Ref.: #31497]	nitrate ChEBI	+	reduction
[Ref.: #31497]	phenylalanine ChEBI	+	carbon source
[Ref.: #31497]	proline ChEBI	+	carbon source
[Ref.: #31497]	suberic acid ChEBI	+	carbon source
[Ref.: #31497]	valerate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31497]		catalase	+	1.11.1.6
[Ref.: #31497]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7200]	Sample type/isolated from	activated sludge
[Ref.: #7200]	Geographic location (country and/or sea, region)	South Korea, Daejeon
[Ref.: #7200]	Country	Republic of Korea
[Ref.: #7200]	Country ISO 3 Code	KOR
[Ref.: #7200]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Activated sludge from a wastewater treatment plant
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From aerobic sludge
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Activated sludge

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681743 (>99% sequence identity) for Phenylobacterium koreense from Microbeatlas

Aquatic Samples	594
Soil Samples	440
Animal Samples	236
Plant Samples	94
Total Samples	1364

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7200]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7200]	Phenylobacterium koreense gene for 16S rRNA, partial sequence	AB166881	1416	ENA	266125 tax ID
[Ref.: #20218]	Phenylobacterium koreense gene for 16S rRNA, partial sequence, strain: NBRC 102285	AB681743	1407	ENA	266125 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phenylobacterium koreense DSM 17809	2928269751	draft	JGI IMG/M	266125 tax ID	*

[Ref.: #7200]	GC-content	68.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31497]	GC-content	68.1 mol%

Availability in culture collections External links

[Ref.: #7200]

Culture collection no.

DSM 17809, IAM 15119, JCM 21577, KCTC 12206, NBRC 102285

[Ref.: #71900]

SI-ID 232743

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenylobacterium glaciei sp. nov., isolated from Vestrebroggerbreen, a valley glacier in Svalbard, Arctic.	Thomas FA, Sinha RK, Hatha AAM, Krishnan KP	Int J Syst Evol Microbiol	10.1099/ijsem.0.005375	2022	*
Phylogeny	Phenylobacterium panacis sp. nov., isolated from the rhizosphere of rusty mountain ginseng.	Farh ME, Kim YJ, Singh P, Hoang VA, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001109	2016	*
Phylogeny	Phenylobacterium koreense sp. nov., isolated from South Korea.	Aslam Z, Im WT, Ten LN, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63687-0	2005	*

References

#7200

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17809

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31497

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27795 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71900

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232743.1 )

#27795

IJSEM 2001 2005 ( DOI 10.1099/ijs.0.63687-0 , PubMed 16166702 )

* These data were automatically processed and therefore are not curated

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