Phenylobacterium koreense (DSM 17809, IAM 15119, JCM 21577)

Name: Phenylobacterium koreense (DSM 17809, IAM 15119, JCM 21577)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2343

Type strain

Strain Designation Slu-01

Culture col. no. DSM 17809 IAM 15119 JCM 21577 KCTC 12206 NBRC 102285 1 more

NCBI tax ID(s) 266125

Special Collections DSMZ JCM KCTC Literature strains

Links

Phenylobacterium koreense Slu-01 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from activated sludge.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 232743

KCTC 12206,IAM 15119,DSM 17809,JCM 21577,NBRC 102285

@ref 20215

Last LPSN update 2025-12-16 09:47:17

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Caulobacterales

Family Caulobacteraceae

Genus Phenylobacterium

Species Phenylobacterium koreense

Full scientific name Phenylobacterium koreense Aslam et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31497	negative	1.5 µm	0.85 µm	rod-shaped
67771	negative

Pigmentation

31497

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7200	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7200	positive	growth	30	mesophilic
31497	positive	growth	20-37
31497	positive	optimum	29	mesophilic
67770	positive	growth	25	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31497	positive	optimum	7.5
31497	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31497	aerobe
67771	aerobe

Spore formation

31497

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31497	NaCl	positive	growth	0-2 %

Observation

@ref	Observation
31497	aggregates in clumps
67770	quinones: Q-10
67771	quinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31497	37054 ChEBI	3-hydroxybutyrate	+	carbon source
31497	17879 ChEBI	4-hydroxybenzoate	+	carbon source
31497	30089 ChEBI	acetate	+	carbon source
31497	17128 ChEBI	adipate	+	carbon source
31497	27689 ChEBI	decanoate	+	carbon source
31497	17632 ChEBI	nitrate	+	reduction
31497	28044 ChEBI	phenylalanine	+	carbon source
31497	26271 ChEBI	proline	+	carbon source
31497	9300 ChEBI	suberic acid	+	carbon source
31497	31011 ChEBI	valerate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31497	catalase	+	1.11.1.6
31497	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7200	activated sludge	South Korea, Daejeon	Republic of Korea	KOR	Asia
67770	Activated sludge from a wastewater treatment plant	Daejeon	Republic of Korea	KOR	Asia
67771	From aerobic sludge		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB681743 (>99% sequence identity) for Phenylobacterium koreense from Microbeatlas

Aquatic Samples	594
Soil Samples	440
Animal Samples	236
Plant Samples	94
Total Samples	1364

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7200	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
124043	ASM4054533v1 assembly for Phenylobacterium koreense DSM 17809	contig	GCA_040545335	2928269751	266125	76.92

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Phenylobacterium koreense gene for 16S rRNA, partial sequence, strain: NBRC 102285	AB681743	1407		266125
7200	Phenylobacterium koreense gene for 16S rRNA, partial sequence	AB166881	1416		266125

GC content

@ref	GC-content (mol%)	Method
7200	68.1	high performance liquid chromatography (HPLC)
31497	68.1

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenylobacterium glaciei sp. nov., isolated from Vestrebroggerbreen, a valley glacier in Svalbard, Arctic.	Thomas FA, Sinha RK, Hatha AAM, Krishnan KP	Int J Syst Evol Microbiol	10.1099/ijsem.0.005375	2022
Phylogeny	Phenylobacterium panacis sp. nov., isolated from the rhizosphere of rusty mountain ginseng.	Farh ME, Kim YJ, Singh P, Hoang VA, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001109	2016
Phylogeny	Phenylobacterium koreense sp. nov., isolated from South Korea.	Aslam Z, Im WT, Ten LN, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63687-0	2005

References

#7200	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17809
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#27795	IJSEM 2001 2005 ( DOI 10.1099/ijs.0.63687-0 , PubMed 16166702 )
#31497	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27795
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Phenylobacterium koreense (DSM 17809, IAM 15119, JCM 21577)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_040545335

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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