Name: Phenylobacterium lituiforme FaiI3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2342

Type strain:

Species: Phenylobacterium lituiforme

Strain Designation: FaiI3

Culture col. no.: DSM 14363, ATCC BAA-294

Strain history: <- B. K. C. Patel <- S. Kanso; FaiI3

NCBI tax ID(s): 273793 (species)

SI-ID 134452

ATCC BAA-294, DSM 14363

Section

Phenylobacterium lituiforme FaiI3 is a facultative anaerobe, thermophilic, Gram-negative bacterium that was isolated from crater from an aquifer of the Great Artesian Basin.

Gram-negative
motile
rod-shaped
facultative anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Phenylobacterium*
	Species	**Phenylobacterium lituiforme**
	Full Scientific Name (LPSN)	Phenylobacterium lituiforme Kanso and Patel 2004

Information on morphological and physiological properties Morphology

[Ref.: #31252]	Gram stain	negative

[Ref.: #31252]	Cell length	2 µm

[Ref.: #31252]	Cell width	0.5 µm

[Ref.: #31252]	Cell shape	rod-shaped

[Ref.: #31252]	Motility	yes

[Ref.: #31252]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5319]

Culture medium

ROUF'S MEDIUM (DSMZ Medium 1019)

[Ref.: #5319]

Culture medium growth

[Ref.: #5319]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5319]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5319]	growth	40 °C
[Ref.: #31252]	growth	25-45 °C
[Ref.: #31252]	optimum	40.5 °C

[Ref.: #5319]	Temperature range	thermophilic
[Ref.: #31252]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31252]			optimum	6.25
[Ref.: #31252]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31252]

Oxygen tolerance

facultative anaerobe

[Ref.: #31252]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31252]		NaCl		growth	0-1	%

[Ref.: #31252]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31252]	acetate ChEBI	+	carbon source
[Ref.: #31252]	cellobiose ChEBI	+	carbon source
[Ref.: #31252]	citrate ChEBI	+	carbon source
[Ref.: #31252]	glucose ChEBI	+	carbon source
[Ref.: #31252]	glycerol ChEBI	+	carbon source
[Ref.: #31252]	lactate ChEBI	+	carbon source
[Ref.: #31252]	phenylalanine ChEBI	+	carbon source
[Ref.: #31252]	pyruvate ChEBI	+	carbon source
[Ref.: #31252]	succinate ChEBI	+	carbon source
[Ref.: #31252]	sucrose ChEBI	+	carbon source
[Ref.: #31252]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31252]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5319]	Sample type/isolated from	crater from an aquifer of the Great Artesian Basin
[Ref.: #5319]	Geographic location (country and/or sea, region)	Queensland
[Ref.: #5319]	Country	Australia
[Ref.: #5319]	Country ISO 3 Code	AUS
[Ref.: #5319]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY534887 (>99% sequence identity) for Phenylobacterium lituiforme from Microbeatlas

Aquatic Samples	82
Soil Samples	102
Animal Samples	20
Plant Samples	5
Total Samples	209

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5319]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5319]	Phenylobacterium lituiforme strain FaiI3 16S ribosomal RNA gene, partial sequence	AY534887	1422	ENA	273793 tax ID

[Ref.: #31252]

GC-content

66.5 mol%

Availability in culture collections External links

[Ref.: #5319]

Culture collection no.

DSM 14363, ATCC BAA-294

[Ref.: #71899]

SI-ID 134452

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenylobacterium terrae sp. nov., isolated from a soil sample of Khyber-Pakhtun-Khwa, Pakistan.	Khan IU, Habib N, Xiao M, Huang X, Khan NU, Im WT, Ahmed I, Zhi XY, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-018-1064-2	2018	*
Phylogeny	Phenylobacterium hankyongense sp. nov., isolated from ginseng field soil.	Choi GM, Lee SY, Choi KD, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.002469	2017	*
Phylogeny	Phenylobacterium deserti sp. nov., isolated from desert soil.	Khan IU, Hussain F, Habib N, Wadaan MAM, Ahmed I, Im WT, Hozzein WN, Zhi XY, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002366	2017	*
Phylogeny	Phenylobacterium kunshanense sp. nov., isolated from the sludge of a pesticide manufacturing factory.	Chu C, Yuan C, Liu X, Yao L, Zhu J, He J, Kwon SW, Huang X	Int J Syst Evol Microbiol	10.1099/ijs.0.063644-0	2014	*
Phylogeny	Phenylobacterium composti sp. nov., isolated from cotton waste compost in Korea.	Weon HY, Kim BY, Kwon SW, Go SJ, Koo BS, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.65530-0	2008	*
Phylogeny	Phenylobacterium lituiforme sp. nov., a moderately thermophilic bacterium from a subsurface aquifer, and emended description of the genus Phenylobacterium.	Kanso S, Patel BKC	Int J Syst Evol Microbiol	10.1099/ijs.0.63138-0	2004	*

References

#5319

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14363

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31252

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27575 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71899

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134452.1 )

#27575

IJSEM 2141 2004 ( DOI 10.1099/ijs.0.63138-0 , PubMed 15545448 )

* These data were automatically processed and therefore are not curated

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