Name: Silanimonas mangrovi AK13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23345

Type strain:

Species: Silanimonas mangrovi

Strain Designation: AK13

Culture col. no.: DSM 24914, MTCC 11082, JCM 17870

Strain history: P. Anil Kumar AK13.

NCBI tax ID(s): 1056510 (species)

Section

Silanimonas mangrovi AK13 is an aerobe, Gram-negative, motile bacterium that was isolated from mangrove sediment.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Silanimonas*
	Species	**Silanimonas mangrovi**
	Full Scientific Name (LPSN)	Silanimonas mangrovi Srinivas et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30545]	Gram stain	negative

[Ref.: #30545]	Cell length	2.5 µm

[Ref.: #30545]	Cell width	0.4 µm

[Ref.: #30545]	Cell shape	rod-shaped

[Ref.: #30545]	Motility	yes

[Ref.: #30545]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30545]	growth	10-40 °C
[Ref.: #30545]	optimum	33.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30545]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30545]			optimum	7.75
[Ref.: #30545]			growth	06-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30545]

Oxygen tolerance

aerobe

[Ref.: #30545]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30545]		NaCl		growth	0-8	%
[Ref.: #30545]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30545]	arabinose ChEBI	+	carbon source
[Ref.: #30545]	cellobiose ChEBI	+	carbon source
[Ref.: #30545]	fructose ChEBI	+	carbon source
[Ref.: #30545]	glucose ChEBI	+	carbon source
[Ref.: #30545]	mannose ChEBI	+	carbon source
[Ref.: #30545]	proline ChEBI	+	carbon source
[Ref.: #30545]	rhamnose ChEBI	+	carbon source
[Ref.: #30545]	salicin ChEBI	+	carbon source
[Ref.: #30545]	tween 20 ChEBI	+	carbon source
[Ref.: #30545]	tween 40 ChEBI	+	carbon source
[Ref.: #30545]	tween 60 ChEBI	+	carbon source
[Ref.: #30545]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30545]		acid phosphatase	+	3.1.3.2
[Ref.: #30545]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19195]	Sample type/isolated from	mangrove sediment
[Ref.: #19195]	Geographic location (country and/or sea, region)	West Bengal, Sunderbans, Namkhana (21° 45' 39.35'' N 88° 13' 48.05'' E)
[Ref.: #19195]	Country	India
[Ref.: #19195]	Country ISO 3 Code	IND
[Ref.: #19195]	Continent	Asia
[Ref.: #19195]	Geographic location	21.7609°/88.2300°

[Ref.: #67770]	Sample type/isolated from	Sediment from mangrove of Namkhana
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sunderbans, West Bengal
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE573746 (>99% sequence identity) for Silanimonas mangrovi subclade from Microbeatlas

Aquatic Samples	504
Soil Samples	56
Animal Samples	44
Plant Samples	18
Total Samples	622

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19195]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19195]	Silanimonas mangrovi AK13 partial 16S rRNA gene	HE573746	1492	ENA	1184255 tax ID

[Ref.: #19195]	GC-content	55.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30545]	GC-content	55.2 mol%

Availability in culture collections External links

[Ref.: #19195]

Culture collection no.

DSM 24914, MTCC 11082, JCM 17870

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Silanimonas mangrovi sp. nov., a member of the family Xanthomonadaceae isolated from mangrove sediment, and emended description of the genus Silanimonas.	Srinivas TNR, Kailash TB, Anil Kumar P	Int J Syst Evol Microbiol	10.1099/ijs.0.038406-0	2012	*

References

#19195

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24914

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30545

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26876 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26876

IJSEM 274 2013 ( DOI 10.1099/ijs.0.038406-0 , PubMed 22427443 )

* These data were automatically processed and therefore are not curated

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