Silanimonas mangrovi (DSM 24914, MTCC 11082, AK13)

Name: Silanimonas mangrovi (DSM 24914, MTCC 11082, AK13)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23345

Type strain

Strain Designation AK13

Culture col. no. DSM 24914 MTCC 11082 AK13 JCM 17870

NCBI tax ID(s) 1056510

Special Collections DSMZ JCM Literature strains

History DSMZ <- P. Anil Kumar, MTCC; AK13 <- JCM <-- P. Anil Kumar AK13.

Links

Silanimonas mangrovi AK13 is an aerobe, Gram-negative, motile bacterium that was isolated from mangrove sediment.

Gram-negative motile rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133018

JCM 17870

@ref 20215

Last LPSN update 2026-05-29 08:30:26

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Silanimonas

Species Silanimonas mangrovi

Full scientific name Silanimonas mangrovi Srinivas et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30545	negative	2.5 µm	0.4 µm	rod-shaped

Pigmentation

30545

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
30545	positive	growth	10-40
30545	positive	optimum	33.5
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
30545	positive	optimum	7.75
30545	positive	growth	06-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

30545

Oxygen toleranceaerobe

Spore formation

30545

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30545	NaCl	positive	growth	0-8 %
30545	NaCl	positive	optimum	1 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30545	22599 ChEBI	arabinose	+	carbon source
30545	17057 ChEBI	cellobiose	+	carbon source
30545	28757 ChEBI	fructose	+	carbon source
30545	17234 ChEBI	glucose	+	carbon source
30545	37684 ChEBI	mannose	+	carbon source
30545	26271 ChEBI	proline	+	carbon source
30545	26546 ChEBI	rhamnose	+	carbon source
30545	17814 ChEBI	salicin	+	carbon source
30545	53424 ChEBI	tween 20	+	carbon source
30545	53423 ChEBI	tween 40	+	carbon source
30545	53425 ChEBI	tween 60	+	carbon source
30545	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30545	acid phosphatase	+	3.1.3.2
30545	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
19195	mangrove sediment	West Bengal, Sunderbans, Namkhana (21° 45' 39.35'' N 88° 13' 48.05'' E)	India	IND	Asia	21.7609	88.23 21.7609/88.23
67770	Sediment from mangrove of Namkhana	Sunderbans, West Bengal	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence HE573746 (>99% sequence identity) for Silanimonas mangrovi subclade from Microbeatlas

Aquatic Samples	504
Soil Samples	56
Animal Samples	44
Plant Samples	18
Total Samples	622

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19195	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19195	Silanimonas mangrovi AK13 partial 16S rRNA gene	HE573746	1492		1184255

GC content

@ref	GC-content (mol%)	Method
19195	55.2	thermal denaturation, midpoint method (Tm)
30545	55.2

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Silanimonas mangrovi sp. nov., a member of the family Xanthomonadaceae isolated from mangrove sediment, and emended description of the genus Silanimonas.	Srinivas TNR, Kailash TB, Anil Kumar P	Int J Syst Evol Microbiol	10.1099/ijs.0.038406-0	2012

References

#19195	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24914
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26876	IJSEM 274 2013 ( DOI 10.1099/ijs.0.038406-0 , PubMed 22427443 )
#30545	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26876
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Silanimonas mangrovi (DSM 24914, MTCC 11082, AK13)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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