Cite this strain

Pelosinus sp. (DSM 26827, HCF1)

Name: Pelosinus sp. (DSM 26827, HCF1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23338

Type strain

Strain Designation HCF1

Culture col. no. DSM 26827 HCF1

NCBI tax ID(s) 2293781

Special Collections DSMZ

Links

HCF1 is an anaerobe, mesophilic prokaryote that was isolated from aquifer sediment.

anaerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 404017

DSM 26827

@ref 20215

Last LPSN update 2025-12-16 09:52:38

Domain Bacillati

Phylum Bacillota

Class Negativicutes

Order Selenomonadales

Family Sporomusaceae

Genus Pelosinus

Full scientific name Pelosinus Shelobolina et al. 2007

Synonyms (1)

Sporotalea

Morphology

Colony morphology

19312

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19312	SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)		Medium recipe at MediaDive	Name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c; with strain-specific modifications) Composition: Na-(DL)-lactate 2.48756 g/l NaCl 2.23881 g/l Yeast extract 1.99005 g/l Casitone 1.99005 g/l Na2CO3 0.995025 g/l MgSO4 x 7 H2O 0.497512 g/l NH4Cl 0.497512 g/l K2HPO4 0.348259 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l DL-Dithiothreitol 0.149254 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l Pyridoxine hydrochloride 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Folic acid 1.99005e-05 g/l Biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19312	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
19312	anaerobe
125439	anaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Groundwater
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19312	aquifer sediment	Washington State, Hanford 100H site	USA	USA	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Hcf1DRAFT assembly for Pelosinus sp. HCF1	contig	GCA_000317005	1235479.3	2511231046	1235479	36.41

Genome browser: GCA_000317005

GC content

@ref	GC-content (mol%)	Method
19312	39.8	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pelosinus sp. HCF1
NCBI: GCA_000317005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.70	no
125439	gram_stain	BacteriaNetⓘ	positive	89.70	no
125439	motility	BacteriaNetⓘ	no	69.40	no
125439	spore_formation	BacteriaNetⓘ	no	70.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pelosinus sp. HCF1
PATRIC: 1235479.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	78.75	no
125438	anaerobic	anaerobicⓘ	yes	82.37	yes
125438	spore-forming	spore-formingⓘ	yes	65.88	no
125438	aerobic	aerobicⓘ	no	90.91	yes
125438	thermophilic	thermophileⓘ	no	93.11	yes
125438	flagellated	motile2+ⓘ	yes	74.56	no

Literature

References

#19312	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26827
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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