Actinoallomurus liliacearum (DSM 45857, BCC 49424, JCM 17938)

Name: Actinoallomurus liliacearum (DSM 45857, BCC 49424, JCM 17938)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23334

Type strain

Strain Designation K10-0485

Culture col. no. DSM 45857 BCC 49424 JCM 17938 NBRC 108762 K10-0485

NCBI tax ID(s) 1080073

Special Collections DSMZ JCM

History DSMZ <- NBRC; NBRC 108762 <- Y. Takahashi; K10-0485 JCM <-- A. Matsumoto K10-0485.

Links

Actinoallomurus liliacearum K10-0485 is a bacterium that was isolated from plant root, Ophiopogon japonicus.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403644

NBRC 108762,JCM 17938,DSM 45857

@ref 20215

Last LPSN update 2026-05-29 08:30:26

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinoallomurus

Species Actinoallomurus liliacearum

Full scientific name Actinoallomurus liliacearum Koyama et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	98.702

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
19171	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
19171	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
19171	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19171	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.381

Observation

67770

Observationquinones: MK-9(H₈), MK-9(H₆)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
19171	plant root, Ophiopogon japonicus		Kanagawa	Japan	JPN	Asia
67770	Root of a perennial plant, Ophiopogon japonicus	Ophiopogon japonicus	Kanagawa Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB668306 (>99% sequence identity) for Actinoallomurus from Microbeatlas

Aquatic Samples	3
Soil Samples	455
Animal Samples	17
Plant Samples	38
Total Samples	513

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19171	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954203v1 assembly for Actinoallomurus liliacearum JCM 17938	scaffold	GCA_039542035	1080073	54.24

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Actinoallomurus liliacearum gene for 16S ribosomal RNA, partial sequence	AB668306	1431		1080073

GC content

@ref	GC-content (mol%)	Method
67770	72	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3954203v1 assembly for Actinoallomurus liliacearum JCM 17938
NCBI: GCA_039542035

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.38	no
125439	motility	BacteriaNetⓘ	no	88.53	no
125439	gram_stain	BacteriaNetⓘ	positive	98.70	no
125439	spore_formation	BacteriaNetⓘ	yes	63.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation of actinomycetes from the root of the plant, Ophiopogon japonicus, and proposal of two new species, Actinoallomurus liliacearum sp. nov. and Actinoallomurus vinaceus sp. nov.	Koyama R, Matsumoto A, Inahashi Y, Omura S, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2012.31	2012

References

#19171	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45857
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoallomurus liliacearum (DSM 45857, BCC 49424, JCM 17938)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039542035

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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