Name: Actinoallomurus liliacearum K10-0485
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23334

Type strain:

Species: Actinoallomurus liliacearum

Strain Designation: K10-0485

Culture col. no.: DSM 45857, BCC 49424, JCM 17938, NBRC 108762

Strain history: A. Matsumoto K10-0485.

NCBI tax ID(s): 1080073 (species)

SI-ID 403644

DSM 45857

Special Collections

DSMZ
JCM

Section

Actinoallomurus liliacearum K10-0485 is a bacterium that was isolated from plant root, Ophiopogon japonicus.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinoallomurus*
	Species	**Actinoallomurus liliacearum**
	Full Scientific Name (LPSN)	Actinoallomurus liliacearum Koyama et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19171]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #19171]

Culture medium growth

[Ref.: #19171]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19171]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #19171]

Culture medium growth

[Ref.: #19171]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19171]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19171]

Culture medium growth

[Ref.: #19171]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19171]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19171]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19171]	Sample type/isolated from	plant root, Ophiopogon japonicus
[Ref.: #19171]	Geographic location (country and/or sea, region)	Kanagawa
[Ref.: #19171]	Country	Japan
[Ref.: #19171]	Country ISO 3 Code	JPN
[Ref.: #19171]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Root of a perennial plant, Ophiopogon japonicus
[Ref.: #67770]	Host species	Ophiopogon japonicus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kanagawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB668306 (>99% sequence identity) for Actinoallomurus from Microbeatlas

Aquatic Samples	3
Soil Samples	455
Animal Samples	17
Plant Samples	38
Total Samples	513

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19171]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Actinoallomurus liliacearum gene for 16S ribosomal RNA, partial sequence	AB668306	1431	GenBank ENA	1080073 tax ID	*

[Ref.: #67770]

GC-content

72 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #19171]

Culture collection no.

DSM 45857, BCC 49424, JCM 17938, NBRC 108762

[Ref.: #87551]

SI-ID 403644

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation of actinomycetes from the root of the plant, Ophiopogon japonicus, and proposal of two new species, Actinoallomurus liliacearum sp. nov. and Actinoallomurus vinaceus sp. nov.	Koyama R, Matsumoto A, Inahashi Y, Omura S, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2012.31	2012	*

References

#19171

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45857

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87551

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403644.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Actinoallomurus liliacearum in external resources:
SILVA
BRENDA
PANGAEA
GBIF