Name: Streptomyces chilikensis RC1830
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23302

Type strain:

Species: Streptomyces chilikensis

Strain Designation: RC1830

Culture col. no.: DSM 42072, JCM 18411

Strain history: V. Raina RC 1830.

NCBI tax ID(s): 1194079 (species)

Section

Streptomyces chilikensis RC1830 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from estuarine brackish water sediment from a boat dockyard.

Gram-positive
ovoid-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces chilikensis**
	Full Scientific Name (LPSN)	Streptomyces chilikensis Ray et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30864]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30864]	Cell length	1.4 µm

[Ref.: #30864]	Cell width	1 µm

[Ref.: #30864]	Cell shape	ovoid-shaped

[Ref.: #30864]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.696

[Ref.: #30864]

Pigment production

yes

Multimedia content

[Ref.: #18929]

Caption:

Medium 65 28°C

[Ref.: #18929]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30864]	growth	28-40 °C
[Ref.: #30864]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #30864]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30864]			optimum	8
[Ref.: #30864]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30864]

Oxygen tolerance

aerobe

[Ref.: #30864]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30864]		NaCl		growth	02-12	%
[Ref.: #30864]		NaCl		optimum	8	%

[Ref.: #30864]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₆), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30864]	arabinose ChEBI	+	carbon source
[Ref.: #30864]	cellobiose ChEBI	+	carbon source
[Ref.: #30864]	fructose ChEBI	+	carbon source
[Ref.: #30864]	galactose ChEBI	+	carbon source
[Ref.: #30864]	glucose ChEBI	+	carbon source
[Ref.: #30864]	maltose ChEBI	+	carbon source
[Ref.: #30864]	mannose ChEBI	+	carbon source
[Ref.: #30864]	raffinose ChEBI	+	carbon source
[Ref.: #30864]	rhamnose ChEBI	+	carbon source
[Ref.: #30864]	sucrose ChEBI	+	carbon source
[Ref.: #30864]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30864]	catalase	+	1.11.1.6
[Ref.: #30864]	cytochrome oxidase	+	1.9.3.1
[Ref.: #30864]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18929]	Sample type/isolated from	estuarine brackish water sediment from a boat dockyard
[Ref.: #18929]	Geographic location (country and/or sea, region)	Odisha, District Khurdha, Chilika Lake, Chandraput (19° 71' N and 85° 19' E)
[Ref.: #18929]	Country	India
[Ref.: #18929]	Country ISO 3 Code	IND
[Ref.: #18929]	Continent	Asia
[Ref.: #18929]	Geographic location	20.1833°/85.3167°

[Ref.: #67770]	Sample type/isolated from	Estuarine brackish water sediment samples from a boat dockyard of Chilika Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Odisha
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18929]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18929]	Streptomyces chilikensis strain RC 1830 16S ribosomal RNA gene, partial sequence	JN050256	1491	ENA	1194079 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces chilikensis RC 1830	GCA_001642695	scaffold	GenBank	1194079 tax ID

[Ref.: #18929]	GC-content	66.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30864]	GC-content	66.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces chilikensis RC 1830 NCBI: GCA_001642695.2
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces chilikensis RC 1830 NCBI: GCA_001642695.1
[Ref.: #69480]	flagellated	no	98.058	no
[Ref.: #69480]	gram-positive	yes	90.73	no
[Ref.: #69480]	anaerobic	no	98.564	yes
[Ref.: #69480]	aerobic	yes	92.896	yes
[Ref.: #69480]	halophile	no	91.765	yes
[Ref.: #69480]	spore-forming	yes	97.013	yes
[Ref.: #69480]	glucose-util	yes	88.683	no
[Ref.: #69480]	motile	no	96.128	yes
[Ref.: #69480]	thermophile	no	98.015	no
[Ref.: #69480]	glucose-ferment	no	88.549	no
[Ref.: #69480]	flagellated	no	98.058	no
[Ref.: #69480]	gram-positive	yes	90.73	no
[Ref.: #69480]	anaerobic	no	98.564	yes
[Ref.: #69480]	aerobic	yes	92.896	yes
[Ref.: #69480]	halophile	no	91.765	yes
[Ref.: #69480]	spore-forming	yes	97.013	yes
[Ref.: #69480]	glucose-util	yes	88.683	no
[Ref.: #69480]	motile	no	96.128	yes
[Ref.: #69480]	thermophile	no	98.015	no
[Ref.: #69480]	glucose-ferment	no	88.549	no

Availability in culture collections External links

[Ref.: #18929]

Culture collection no.

DSM 42072, JCM 18411

Literature:

	Title	Authors	Journal	DOI	Year
Enzymology	Purification and characterization of an extracellular thermo-alkali stable, metal tolerant chitinase from Streptomyces chilikensis RC1830 isolated from a brackish water lake sediment.	Ray L, Panda AN, Mishra SR, Pattanaik AK, Adhya TK, Suar M, Raina V	Biotechnol Rep (Amst)	10.1016/j.btre.2019.e00311	2019	*
Phylogeny	Streptomyces chilikensis sp. nov., a halophilic streptomycete isolated from brackish water sediment.	Ray L, Suar M, Pattnaik AK, Raina V	Int J Syst Evol Microbiol	10.1099/ijs.0.046284-0	2013	*
	Exploration of genomic and functional features of chitinolytic bacterium Streptomyces chilikensis RC1830, isolated from Chilika Lake, India.	Tanaya Behera H, Mojumdar A, Kumari K, Kumar Gouda S, Das S, Ray L	3 Biotech	10.1007/s13205-022-03184-5	2022	*
	Biocontrol of wilt disease of rice seedlings incited by Fusarium oxysporum through soil application of Streptomyces chilikensis RC1830.	Behera HT, Mojumdar A, Behera SS, Das S, Ray L	Lett Appl Microbiol	10.1111/lam.13807	2022	*

References

#18929

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42072

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30864

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27194 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27194

IJSEM 2757 2013 ( DOI 10.1099/ijs.0.046284-0 , PubMed 23291893 )

* These data were automatically processed and therefore are not curated

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Streptomyces chilikensis RC 1830

Streptomyces chilikensis RC 1830

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