Streptomyces chilikensis (DSM 42072, JCM 18411, RC1830)

Name: Streptomyces chilikensis (DSM 42072, JCM 18411, RC1830)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23302

Type strain

Strain Designation RC1830

Culture col. no. DSM 42072 JCM 18411 RC1830

NCBI tax ID(s) 1194079

Special Collections DSMZ JCM Literature strains

Links

Streptomyces chilikensis RC1830 is an aerobe, spore-forming, Gram-positive prokaryote that was isolated from estuarine brackish water sediment from a boat dockyard.

spore-forming Gram-positive ovoid-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133540

JCM 18411

@ref 20215

Last LPSN update 2025-12-16 09:52:38

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces chilikensis

Full scientific name Streptomyces chilikensis Ray et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30864	positive	1.4 µm	1 µm	ovoid-shaped
125438					90
125438	positive				90.701

Pigmentation

30864

Productionyes

Multimedia

@ref:	18929
multimedia content:	DSM_42072.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_42072.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
30864	positive	growth	28-40
30864	positive	optimum	30	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30864	positive	optimum	8
30864	positive	growth	06-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

30864

Oxygen toleranceaerobe

Spore formation

30864

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30864	NaCl	positive	growth	02-12 %
30864	NaCl	positive	optimum	8 %

Observation

@ref	Observation
30864	aggregates in chains
67770	quinones: MK-9(H₆), MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30864	22599 ChEBI	arabinose	+	carbon source
30864	17057 ChEBI	cellobiose	+	carbon source
30864	28757 ChEBI	fructose	+	carbon source
30864	28260 ChEBI	galactose	+	carbon source
30864	17234 ChEBI	glucose	+	carbon source
30864	17306 ChEBI	maltose	+	carbon source
30864	37684 ChEBI	mannose	+	carbon source
30864	16634 ChEBI	raffinose	+	carbon source
30864	26546 ChEBI	rhamnose	+	carbon source
30864	17992 ChEBI	sucrose	+	carbon source
30864	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30864	catalase	+	1.11.1.6
30864	cytochrome oxidase	+	1.9.3.1
30864	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
18929	estuarine brackish water sediment from a boat dockyard	Odisha, District Khurdha, Chilika Lake, Chandraput (19° 71' N and 85° 19' E)	India	IND	Asia	20.1833	85.3167 20.1833/85.3167
67770	Estuarine brackish water sediment samples from a boat dockyard of Chilika Lake	Odisha	India	IND	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18929	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM164269v2 assembly for Streptomyces chilikensis RC 1830	scaffold	GCA_001642695	1194079.13	8023575271	1194079

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18929	Streptomyces chilikensis strain RC 1830 16S ribosomal RNA gene, partial sequence	JN050256	1491		1194079

GC content

@ref	GC-content (mol%)	Method
18929	66.8	thermal denaturation, midpoint method (Tm)
30864	66.8

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces chilikensis RC 1830
NCBI: GCA_001642695.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.70	no
125438	anaerobic	anaerobicⓘ	no	98.36	yes
125438	aerobic	aerobicⓘ	yes	83.75	yes
125438	spore-forming	spore-formingⓘ	yes	88.77	no
125438	thermophilic	thermophileⓘ	no	94.00	no
125438	flagellated	motile2+ⓘ	no	90.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Exploration of genomic and functional features of chitinolytic bacterium Streptomyces chilikensis RC1830, isolated from Chilika Lake, India.	Tanaya Behera H, Mojumdar A, Kumari K, Kumar Gouda S, Das S, Ray L	3 Biotech	10.1007/s13205-022-03184-5	2022
Enzymology	Purification and characterization of an extracellular thermo-alkali stable, metal tolerant chitinase from Streptomyces chilikensis RC1830 isolated from a brackish water lake sediment.	Ray L, Panda AN, Mishra SR, Pattanaik AK, Adhya TK, Suar M, Raina V	Biotechnol Rep (Amst)	10.1016/j.btre.2019.e00311	2019
	Biocontrol of wilt disease of rice seedlings incited by Fusarium oxysporum through soil application of Streptomyces chilikensis RC1830.	Behera HT, Mojumdar A, Behera SS, Das S, Ray L	Lett Appl Microbiol	10.1111/lam.13807	2022
Phylogeny	Streptomyces chilikensis sp. nov., a halophilic streptomycete isolated from brackish water sediment.	Ray L, Suar M, Pattnaik AK, Raina V	Int J Syst Evol Microbiol	10.1099/ijs.0.046284-0	2013

References

#18929	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42072
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27194	IJSEM 2757 2013 ( DOI 10.1099/ijs.0.046284-0 , PubMed 23291893 )
#30864	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27194
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces chilikensis (DSM 42072, JCM 18411, RC1830)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001642695

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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