Name: Streptococcus troglodytae DSM 25324
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23299

Type strain:

Species: Streptococcus troglodytae

Culture col. no.: DSM 25324, JCM 18038, CCUG 70864, TKU 31

Strain history: M. Okamoto TKU 31.

NCBI tax ID(s): 1111760 (species)

SI-ID 404388

DSM 25324

Other strains from Streptococcus troglodytae

S. troglodytae JCM 18039
S. troglodytae JCM 18040
S. troglodytae JCM 18041
S. troglodytae JCM 18042
S. troglodytae JCM 18043

Section

Streptococcus troglodytae DSM 25324 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from chimpanzee oral cavity.

coccus-shaped
Gram-positive
mesophilic
microaerophile
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus troglodytae**
	Full Scientific Name (LPSN)	Streptococcus troglodytae Okamoto et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30590]	Gram stain	positive

[Ref.: #30590]	Cell length	0.6 µm

[Ref.: #30590]	Cell width	0.6 µm

[Ref.: #30590]	Cell shape	coccus-shaped

[Ref.: #19227]

Incubation period

1-2 days

[Ref.: #30590]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19227]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #19227]

Culture medium growth

[Ref.: #19227]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19227]

Culture medium composition

expand / minimize

[Ref.: #19227]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #19227]

Culture medium growth

[Ref.: #19227]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19227]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19227]	growth	37 °C
[Ref.: #63756]	growth	37 °C
[Ref.: #67770]	growth	35 °C

[Ref.: #19227]	Temperature range	mesophilic
[Ref.: #63756]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19227]	Oxygen tolerance	microaerophile
[Ref.: #30590]	Oxygen tolerance	facultative anaerobe
[Ref.: #63756]	Oxygen tolerance	microaerophile

[Ref.: #30590]

Ability of spore formation

[Ref.: #30590]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	arginine ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #30590]	cellobiose ChEBI	+	carbon source
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-mannitol ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #30590]	esculin ChEBI	+	hydrolysis
[Ref.: #30590]	fructose ChEBI	+	carbon source
[Ref.: #30590]	galactose ChEBI	+	carbon source
[Ref.: #30590]	glucose ChEBI	+	carbon source
[Ref.: #30590]	glycerol ChEBI	+	carbon source
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	hippurate ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #30590]	lactose ChEBI	+	carbon source
[Ref.: #68381]	lactose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #30590]	maltose ChEBI	+	carbon source
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #30590]	mannitol ChEBI	+	carbon source
[Ref.: #30590]	mannose ChEBI	+	carbon source
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #30590]	melibiose ChEBI	+	carbon source
[Ref.: #68381]	melibiose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #30590]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #30590]	raffinose ChEBI	+	carbon source
[Ref.: #68381]	raffinose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #30590]	salicin ChEBI	+	carbon source
[Ref.: #30590]	sorbitol ChEBI	+	carbon source
[Ref.: #68381]	sorbitol ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #30590]	sucrose ChEBI	+	carbon source
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #30590]	trehalose ChEBI	+	carbon source
[Ref.: #68381]	trehalose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68381]		acetoin ChEBI	yes	* from API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68381]		acetoin ChEBI	+	* from API rID32STR

	Enzyme	Enzyme activity	EC number
[Ref.: #30590]	acid phosphatase	+	3.1.3.2
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #30590]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR
[Ref.: #30590]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68381]	alpha-galactosidase	+	3.2.1.22	* from API rID32STR
[Ref.: #68381]	arginine dihydrolase	-	3.5.3.6	* from API rID32STR
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #19227]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68381]	glycyl tryptophan arylamidase	-		* from API rID32STR
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #30590]	urease	+	3.5.1.5
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #19227]	10583	-	+	-	-	+	-	-	+	+	+	+	+	+	-	-	-	+	+	-	-	-	-	-	-	-	+	+	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19227]	Sample type/isolated from	chimpanzee (Pan troglodytes) oral cavity
[Ref.: #19227]	Host species	Pan troglodytes
[Ref.: #19227]	Geographic location (country and/or sea, region)	Aichi, Inuyama
[Ref.: #19227]	Country	Japan
[Ref.: #19227]	Country ISO 3 Code	JPN
[Ref.: #19227]	Continent	Asia

[Ref.: #63756]	Sample type/isolated from	Chimpanzee,oral cavity

[Ref.: #67770]	Sample type/isolated from	Chimpanzee oral cavity
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Primates
#Host Body-Site	#Oral cavity and airways	#Mouth

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19227]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19227]	Streptococcus troglodytae gen for 16S rRNA, partial sequence, strain: TKU 31	AB679299	1452	ENA	1111760 tax ID
[Ref.: #67770]	Streptococcus troglodytae JCM 18038 gene for 16S rRNA, partial sequence	LC521977	1492	ENA	1111760 tax ID

[Ref.: #19227]	GC-content	38 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30590]	GC-content	38 mol%
[Ref.: #67770]	GC-content	38.5 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #19227]

Culture collection no.

DSM 25324, JCM 18038, CCUG 70864, TKU 31

[Ref.: #87518]

SI-ID 404388

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Streptococcus troglodytae TKU31 isolated from the oral cavity of a chimpanzee (Pan troglodytes).	Okamoto M, Naito M, Miyanohara M, Imai S, Nomura Y, Saito W, Momoi Y, Takada K, Miyabe-Nishiwaki T, Tomonaga M, Hanada N	Microbiol Immunol	10.1111/1348-0421.12453	2016	*
Phylogeny	Streptococcusdentiloxodontae sp. nov., isolated from the oral cavity of elephants.	Shinozaki-Kuwahara N, Saito M, Hirasawa M, Hirasawa M, Takada K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001280	2016	*
Phylogeny	Streptococcus troglodytae sp. nov., from the chimpanzee oral cavity.	Okamoto M, Imai S, Miyanohara M, Saito W, Momoi Y, Abo T, Nomura Y, Ikawa T, Ogawa T, Miyabe-Nishiwaki T, Kaneko A, Watanabe A, Watanabe S, Hayashi M, Tomonaga M, Hanada N	Int J Syst Evol Microbiol	10.1099/ijs.0.039388-0	2012	*

References

#19227

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25324

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30590

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26921 (see below)

#63756 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70864
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68381

Automatically annotated from API rID32STR .

#87518

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404388.1 )

#26921

IJSEM 418 2013 ( DOI 10.1099/ijs.0.039388-0 , PubMed 22447699 )

* These data were automatically processed and therefore are not curated

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