Name: Streptococcus danieliae ERD01G
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23298

Type strain:

Species: Streptococcus danieliae

Strain Designation: ERD01G

Culture col. no.: DSM 22233, CCUG 57647

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; ERD01G

NCBI tax ID(s): 747656 (species)

SI-ID 402639

DSM 22233, CCUG 57647

Other strains from Streptococcus danieliae

S. danieliae 3G1BAP1, DSM 26621

Section

Streptococcus danieliae ERD01G is a microaerophile, mesophilic bacterium that was isolated from cecal content of a male TNF^{delta ARE} mouse.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus danieliae**
	Full Scientific Name (LPSN)	Streptococcus danieliae Clavel et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #68370]	Type of hemolysis	beta * from API 20STR
[Ref.: #68370]	Hemolysis ability	1 * from API 20STR

[Ref.: #19213]	Incubation period	3-7 days

[Ref.: #61404]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19213]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #19213]

Culture medium growth

[Ref.: #19213]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19213]

Culture medium composition

expand / minimize

[Ref.: #19213]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #19213]

Culture medium growth

[Ref.: #19213]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19213]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19213]			growth	37 °C
[Ref.: #61404]			growth	37 °C

[Ref.: #19213]	Temperature range	mesophilic
[Ref.: #61404]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19213]	Oxygen tolerance	microaerophile
[Ref.: #61404]	Oxygen tolerance	microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68370]	arginine ChEBI	-	hydrolysis	* from API 20STR, API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68370]	D-mannitol ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68370]	D-ribose ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68370]	D-sorbitol ChEBI	-	builds acid from	* from API 20STR
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68370]	esculin ChEBI	-	hydrolysis	* from API 20STR
[Ref.: #68370]	glycogen ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68370]	hippurate ChEBI	-	hydrolysis	* from API 20STR, API rID32STR
[Ref.: #68370]	inulin ChEBI	-	builds acid from	* from API 20STR
[Ref.: #68370]	L-arabinose ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68370]	lactose ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68370]	raffinose ChEBI	-	builds acid from	* from API 20STR, API rID32STR
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68370]	starch ChEBI	-	builds acid from	* from API 20STR
[Ref.: #68381]	trehalose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68370]	trehalose ChEBI	-	builds acid from	* from API 20STR
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68370]		acetoin ChEBI	no	* from API 20STR, API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68381]		acetoin ChEBI	-	* from API rID32STR, API 20STR

	Enzyme	Enzyme activity	EC number
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	-		* from API rID32STR
[Ref.: #68370]	alkaline phosphatase	+	3.1.3.1	* from API 20STR
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR
[Ref.: #68381]	alpha-galactosidase	-	3.2.1.22	* from API rID32STR, API 20STR
[Ref.: #68381]	arginine dihydrolase	-	3.5.3.6	* from API rID32STR, API 20STR
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR, API 20STR
[Ref.: #68381]	beta-glucosidase	-	3.2.1.21	* from API rID32STR, API 20STR
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR, API 20STR
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #68370]	leucine arylamidase	+	3.4.11.1	* from API 20STR
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR, API 20STR
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

API® 20STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Acetoin production (Voges Proskauer test)VP	Hippuric acid hydrolysisHIP	Esculin hydrolysis/beta-glucosidaseESC	Pyrrolidonyl arylamidasePYRA	alpha-Galactosidasealpha GAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	Alkaline phosphatasePAL	Leucine arylamidaseLAP	Arginine dihydrolaseADH	Acid from D-riboseRIB	Acid from L-arabinoseARA	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	beta hemolysis presentbeta HEM
[Ref.: #19213]	841	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #19213]	10811	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #19213]	10538	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	+	-	-	+/-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19213]	Sample type/isolated from	cecal content of a male TNF^{delta ARE} mouse
[Ref.: #19213]	Country	Germany
[Ref.: #19213]	Country ISO 3 Code	DEU
[Ref.: #19213]	Continent	Europe

[Ref.: #61404]	Sample type/isolated from	Mouse caecum,male TNFdeltaARE
[Ref.: #61404]	Sampling date	2008-10-27
[Ref.: #61404]	Geographic location (country and/or sea, region)	Freising-Weihenstephan
[Ref.: #61404]	Country	Germany
[Ref.: #61404]	Country ISO 3 Code	DEU
[Ref.: #61404]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ456229 (>99% sequence identity) for Streptococcus from Microbeatlas

Aquatic Samples	392
Soil Samples	358
Animal Samples	32049
Plant Samples	94
Total Samples	32893

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19213]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19213]	Streptococcus danieliae strain ERD01G 16S ribosomal RNA gene, partial sequence	GQ456229	1419	ENA	747656 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptococcus danieliae DSM 22233	GCA_025447695	contig	GenBank	747656 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptococcus danieliae DSM 22233 NCBI: GCA_025447695.1
[Ref.: #69480]	motile	no	95.504	no
[Ref.: #69480]	flagellated	no	98.475	no
[Ref.: #69480]	gram-positive	yes	95.705	no
[Ref.: #69480]	anaerobic	no	95.245	yes
[Ref.: #69480]	aerobic	no	96.365	yes
[Ref.: #69480]	halophile	yes	84.12	no
[Ref.: #69480]	spore-forming	no	95.391	no
[Ref.: #69480]	glucose-ferment	yes	85.893	no
[Ref.: #69480]	thermophile	no	97.562	yes
[Ref.: #69480]	glucose-util	yes	91.159	no

Availability in culture collections External links

[Ref.: #19213]

Culture collection no.

DSM 22233, CCUG 57647

[Ref.: #87517]

SI-ID 402639

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptococcus danieliae sp. nov., a novel bacterium isolated from the caecum of a mouse.	Clavel T, Charrier C, Haller D	Arch Microbiol	10.1007/s00203-012-0846-6	2012	*

References

#19213

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22233

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#61404 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57647

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68370

Automatically annotated from API 20STR .

#68381

Automatically annotated from API rID32STR .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87517

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402639.1 )

* These data were automatically processed and therefore are not curated

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Streptococcus danieliae DSM 22233

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