Name: Salinicoccus qingdaonensis ZXM223
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23290

Type strain:

Species: Salinicoccus qingdaonensis

Strain Designation: ZXM223

Culture col. no.: DSM 27102, CGMCC 1.8895, LMG 24855

Strain history: <- LMG <- X.-H. Zhang <- X. M. Zhang, Ocean Univ. China, Qingdao, P. R. China

NCBI tax ID(s): 576118 (species)

SI-ID 360661

LMG 24855, CGMCC 1.8895, DSM 27102

Section

Salinicoccus qingdaonensis ZXM223 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from seawater sample collected from coastal seawater.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Salinicoccus*
	Species	**Salinicoccus qingdaonensis**
	Full Scientific Name (LPSN)	Salinicoccus qingdaonensis Qu et al. 2012

Synonym

"Lacicoccus qingdaonensis"

Information on morphological and physiological properties Morphology

[Ref.: #30196]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30196]	Cell width	0.4-0.6 µm

[Ref.: #30196]	Cell shape	coccus-shaped

[Ref.: #30196]	Motility	no

[Ref.: #30196]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19135]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #19135]

Culture medium growth

[Ref.: #19135]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19135]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19135]	growth	28 °C
[Ref.: #30196]	growth	16-42 °C
[Ref.: #30196]	optimum	28 °C

[Ref.: #19135]	Temperature range	mesophilic
[Ref.: #30196]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30196]			optimum	8.5
[Ref.: #30196]			growth	6-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30196]

Oxygen tolerance

aerobe

[Ref.: #30196]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.824

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30196]		NaCl		growth	0-25	%
[Ref.: #30196]		NaCl		optimum	3	%

[Ref.: #19135]	Murein short key	A11.02
[Ref.: #19135]	Murein types	A3alpha L-Lys-Gly_5-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30196]	esculin ChEBI	+	hydrolysis
[Ref.: #30196]	fructose ChEBI	+	carbon source
[Ref.: #30196]	glucose ChEBI	+	carbon source
[Ref.: #30196]	glycerol ChEBI	+	carbon source
[Ref.: #30196]	nitrate ChEBI	+	reduction
[Ref.: #30196]	trehalose ChEBI	+	carbon source
[Ref.: #30196]	tween 80 ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30196]		catalase	+	1.11.1.6
[Ref.: #30196]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19135]	Sample type/isolated from	seawater sample collected from coastal seawater
[Ref.: #19135]	Geographic location (country and/or sea, region)	Qingdao
[Ref.: #19135]	Country	China
[Ref.: #19135]	Country ISO 3 Code	CHN
[Ref.: #19135]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ436724 (>99% sequence identity) for Salinicoccus qingdaonensis subclade from Microbeatlas

Aquatic Samples	91
Soil Samples	177
Animal Samples	1027
Plant Samples	24
Total Samples	1319

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19135]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19135]	Salinicoccus qingdaonensis strain ZXM223 16S ribosomal RNA gene, partial sequence	FJ436724	1408	ENA	576118 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinicoccus qingdaonensis CGMCC 1.8895	GCA_900101075	scaffold	GenBank	576118 tax ID	*
[Ref.: #66792]	Salinicoccus qingdaonensis strain CGMCC 1.8895	576118.3	wgs	PATRIC	576118 tax ID	*
[Ref.: #66792]	Salinicoccus qingdaoensis CGMCC 1.8895	2667527445	draft	JGI IMG/M	576118 tax ID	*

[Ref.: #19135]

GC-content

43.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinicoccus qingdaonensis CGMCC 1.8895 NCBI: GCA_900101075.1
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicoccus qingdaonensis CGMCC 1.8895 NCBI: GCA_900101075.1
[Ref.: #69480]	motile	no	91.129	no
[Ref.: #69480]	flagellated	no	93.985	yes
[Ref.: #69480]	gram-positive	yes	93.645	no
[Ref.: #69480]	anaerobic	no	99.393	yes
[Ref.: #69480]	aerobic	yes	96.514	no
[Ref.: #69480]	halophile	yes	97.512	no
[Ref.: #69480]	spore-forming	no	88.511	no
[Ref.: #69480]	glucose-ferment	no	59.122	no
[Ref.: #69480]	thermophile	no	99.864	no
[Ref.: #69480]	glucose-util	yes	84.082	yes

Availability in culture collections External links

[Ref.: #19135]

Culture collection no.

DSM 27102, CGMCC 1.8895, LMG 24855

[Ref.: #87511]

SI-ID 360661

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicoccus qingdaonensis sp. nov., isolated from coastal seawater during a bloom of green algae.	Qu Z, Li Z, Zhang X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.030551-0	2011	*
Phylogeny	Corticicoccus populi gen. nov., sp. nov., a member of the family Staphylococcaceae, isolated from symptomatic bark of Populus x euramericana canker.	Li Y, Wang SK, Xue H, Chang JP, Guo LM, Yang XQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001602	2017	*

References

#19135

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27102

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30196

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26542 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87511

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID360661.1 )

#26542

IJSEM 545 2012 ( DOI 10.1099/ijs.0.030551-0 , PubMed 21498663 )

* These data were automatically processed and therefore are not curated

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Salinicoccus qingdaonensis CGMCC 1.8895

Salinicoccus qingdaonensis CGMCC 1.8895

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