Name: Sphingopyxis panaciterrulae DSM 27163
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23282

Type strain:

Species: Sphingopyxis panaciterrulae

Variant: Isotype of BacDive ID 14286

Culture col. no.: DSM 27163, DCY 34

Strain history: <- KCTC <- S. Srinivasan, Korean Ginseng Center and Ginseng Genetic Resource Bank, Gyeonggi; DC34

NCBI tax ID(s): 462372 (species)

Other strains from Sphingopyxis panaciterrulae

S. panaciterrulae DSM 25122, JCM 14844, KCTC 22112, ... (type strain)

Section

Sphingopyxis panaciterrulae DSM 27163 is a Gram-negative bacterium that was isolated from soil of ginseng field.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingopyxis*
	Species	**Sphingopyxis panaciterrulae**
	Full Scientific Name (LPSN)	Sphingopyxis panaciterrulae Srinivasan et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.98

Multimedia content

[Ref.: #19106]

Intellectual property rights:

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.98

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19106]	Sample type/isolated from	soil of ginseng field
[Ref.: #19106]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #19106]	Country	Republic of Korea
[Ref.: #19106]	Country ISO 3 Code	KOR
[Ref.: #19106]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingopyxis panaciterrulae DSM 27163	GCA_014199295	contig	GenBank	462372 tax ID	*
[Ref.: #66792]	Sphingopyxis panaciterrulae strain DSM 27163	462372.3	wgs	PATRIC	462372 tax ID	*
[Ref.: #66792]	Sphingopyxis panaciterrulae DSM 27163	2828386659	draft	JGI IMG/M	462372 tax ID	*

[Ref.: #19106]

GC-content

62.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingopyxis panaciterrulae strain DSM 27163 PATRIC: 462372.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingopyxis panaciterrulae strain DSM 27163 PATRIC: 462372.3
[Ref.: #69480]	gram-positive	no	96.501	no
[Ref.: #69480]	anaerobic	no	99.331	no
[Ref.: #69480]	halophile	no	93.128	no
[Ref.: #69480]	spore-forming	no	93.882	no
[Ref.: #69480]	glucose-util	yes	88.988	no
[Ref.: #69480]	aerobic	yes	93.28	no
[Ref.: #69480]	flagellated	no	87.688	no
[Ref.: #69480]	thermophile	no	97.544	no
[Ref.: #69480]	motile	yes	62.7	no
[Ref.: #69480]	glucose-ferment	no	93.298	no

Availability in culture collections External links

[Ref.: #19106]

Culture collection no.

DSM 27163, DCY 34

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingopyxis indica sp. nov., isolated from a high dose point hexachlorocyclohexane (HCH)-contaminated dumpsite.	Jindal S, Dua A, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.040840-0	2012	*
Phylogeny	Sphingopyxis panaciterrulae sp. nov., isolated from soil of a ginseng field.	Srinivasan S, Kim MK, Sathiyaraj G, Veena V, Mahalakshmi M, Kalaiselvi S, Kim YJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.019414-0	2009	*

References

#19106

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27163

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Sphingopyxis panaciterrulae strain DSM 27163

Sphingopyxis panaciterrulae strain DSM 27163

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