Sphingopyxis panaciterrulae (DSM 27163, DCY 34)

Name: Sphingopyxis panaciterrulae (DSM 27163, DCY 34)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23282

Type strain

Variant Isotype of BacDive ID 14286

Culture col. no. DSM 27163 DCY 34

NCBI tax ID(s) 462372

Special Collections DSMZ

History <- KCTC <- S. Srinivasan, Korean Ginseng Center and Ginseng Genetic Resource Bank, Gyeonggi; DC34

Sphingopyxis panaciterrulae DSM 27163 is a bacterium that was isolated from soil of ginseng field.

genome sequence Bacteria

Name and taxonomic classification

Culture Collection Numbers

DSM 27163 DCY 34

@ref 20215

Last LPSN update 2026-02-09 11:23:43

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Sphingopyxis

Species Sphingopyxis panaciterrulae

Full scientific name Sphingopyxis panaciterrulae Srinivasan et al. 2010

BacDive ID	Other strains from **Sphingopyxis panaciterrulae** (1)	Type strain
14286	S. panaciterrulae DSM 25122, JCM 14844, KCTC 22112, DCY 34 (type strain)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.7
125438	negative	93.952

Multimedia

@ref:	19106
multimedia content:	DSM_27163.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_27163.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.5

Spore formation

@ref	Spore formation	Confidence
125439		97.2
125438		90.33

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19106	soil of ginseng field	Daejeon	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419929v1 assembly for Sphingopyxis panaciterrulae DSM 27163	contig	GCA_014199295	462372.3	2828386659	462372	66.07

GC content

@ref	GC-content (mol%)	Method
19106	62.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphingopyxis panaciterrulae DSM 27163
NCBI: GCA_014199295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.20	no
125439	motility	BacteriaNetⓘ	yes	75.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingopyxis panaciterrulae strain DSM 27163
PATRIC: 462372.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.95	no
125438	anaerobic	anaerobicⓘ	no	94.10	no
125438	spore-forming	spore-formingⓘ	no	90.33	no
125438	aerobic	aerobicⓘ	yes	89.36	no
125438	thermophilic	thermophileⓘ	no	97.41	no
125438	flagellated	motile2+ⓘ	yes	64.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingopyxis indica sp. nov., isolated from a high dose point hexachlorocyclohexane (HCH)-contaminated dumpsite.	Jindal S, Dua A, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.040840-0	2012
Phylogeny	Sphingopyxis panaciterrulae sp. nov., isolated from soil of a ginseng field.	Srinivasan S, Kim MK, Sathiyaraj G, Veena V, Mahalakshmi M, Kalaiselvi S, Kim YJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.019414-0	2009

References

#19106	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27163
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Sphingopyxis panaciterrulae (DSM 27163, DCY 34)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014199295

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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