Rhizorhabdus starnbergensis (DSM 25077, LMG 26763, 382)

Name: Rhizorhabdus starnbergensis (DSM 25077, LMG 26763, 382)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23281

Type strain

Strain Designation 382

Culture col. no. DSM 25077 LMG 26763 382

NCBI tax ID(s) 1007516

Special Collections DSMZ Literature strains

History <- H. Chen, DSMZ GmbH, Germany; strain 382

Links

Rhizorhabdus starnbergensis 382 is an aerobe, Gram-negative, motile bacterium that was isolated from water of a mesotrophic prealpine lake.

Gram-negative motile rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 379147

LMG 26763,DSM 25077

@ref 20215

Last LPSN update 2026-02-09 11:23:43

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Sphingomonadaceae

Genus Rhizorhabdus

Species Rhizorhabdus starnbergensis

Full scientific name Rhizorhabdus starnbergensis (Chen et al. 2013) Hördt et al. 2020

Synonyms (1)

Sphingomonas starnbergensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30716	negative	1.45 µm	0.525 µm	rod-shaped

Colony morphology

19255

Incubation period8-14 days

Pigmentation

30716

Productionyes

Multimedia

@ref:	19255
multimedia content:	DSM_25077.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_25077.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19255	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
19255	FRESHWATER HD MEDIUM (DSMZ Medium 1312)		Medium recipe at MediaDive	Name: FRESHWATER HD MEDIUM (DSMZ Medium 1312) Composition: Agar 14.0 g/l HEPES 2.38 g/l Peptone 0.5 g/l Yeast extract 0.25 g/l D-Glucose 0.1 g/l MgSO4 x 7 H2O 0.0493 g/l NaHCO3 0.025 g/l CaCO3 0.025 g/l CaCl2 x 2 H2O 0.0147 g/l KNO3 0.01 g/l KH2PO4 0.0014 g/l NH4Cl 0.00053 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19255	positive	growth	28
30716	positive	growth	10-37
30716	positive	optimum	28

Culture pH

@ref	Ability	Type	PH	PH range
30716	positive	optimum	7
30716	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

30716

Oxygen toleranceaerobe

Spore formation

30716

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
30716	22599 ChEBI	arabinose	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
30716	17057 ChEBI	cellobiose	+	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
30716	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
30716	28757 ChEBI	fructose	+	carbon source
30716	33984 ChEBI	fucose	+	carbon source
30716	28260 ChEBI	galactose	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
30716	17234 ChEBI	glucose	+	carbon source
30716	17754 ChEBI	glycerol	+	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
30716	17306 ChEBI	maltose	+	carbon source
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
30716	29864 ChEBI	mannitol	+	carbon source
30716	37684 ChEBI	mannose	+	carbon source
30716	506227 ChEBI	N-acetylglucosamine	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
30716	26546 ChEBI	rhamnose	+	carbon source
30716	15963 ChEBI	ribitol	+	carbon source
30716	30911 ChEBI	sorbitol	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
30716	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
30716	alkaline phosphatase	+	3.1.3.1
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
30716	catalase	+	1.11.1.6
30716	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
19255	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+
19255	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19255	water of a mesotrophic prealpine lake	Starnberger See near the village of Ammerland (47° 55' N, 11°02' E) at a depth of 1 m	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19255	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19255	Sphingomonas starnbergensis strain 382 16S ribosomal RNA gene, partial sequence	JN591314	1456		1007516

GC content

@ref	GC-content (mol%)	Method
19255	64.1	high performance liquid chromatography (HPLC)
30716	64.1

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020
Phylogeny	Sphingomonas starnbergensis sp. nov., isolated from a prealpine freshwater lake.	Chen H, Jogler M, Tindall BJ, Klenk HP, Rohde M, Busse HJ, Overmann J	Int J Syst Evol Microbiol	10.1099/ijs.0.042887-0	2012

References

#19255	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25077
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27047	IJSEM 1017 2013 ( DOI 10.1099/ijs.0.042887-0 , PubMed 22685105 )
#30716	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27047
#68369	Automatically annotated from API 20NE .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhizorhabdus starnbergensis (DSM 25077, LMG 26763, 382)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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