Name: Sphingomonas polyaromaticivorans B2-7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23279

Type strain:

Species: Sphingomonas polyaromaticivorans

Strain Designation: B2-7

Culture col. no.: DSM 27062, JCM 16711, KCCM 42951

Strain history: Y. Luo B2-7.

NCBI tax ID(s): 433606 (species)

SI-ID 406281

DSM 27062

Special Collections

Section

Sphingomonas polyaromaticivorans B2-7 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water of oil port.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas polyaromaticivorans**
	Full Scientific Name (LPSN)	Sphingomonas polyaromaticivorans Luo et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30326]	Gram stain	negative

[Ref.: #30326]	Cell length	1.5 µm

[Ref.: #30326]	Cell width	0.6 µm

[Ref.: #30326]	Cell shape	rod-shaped

[Ref.: #30326]	Motility	no

[Ref.: #30326]

Pigment production

yes

Multimedia content

[Ref.: #19150]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19150]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #19150]

Culture medium growth

[Ref.: #19150]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19150]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19150]	growth	28 °C
[Ref.: #30326]	growth	20-35 °C
[Ref.: #30326]	optimum	26 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #30326]			optimum	7
[Ref.: #30326]			growth	4-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30326]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30326]		NaCl		optimum	0.50	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30326]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30326]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #30326]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30326]	alanine ChEBI	+	carbon source
[Ref.: #30326]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30326]	asparagine ChEBI	+	carbon source
[Ref.: #30326]	aspartate ChEBI	+	carbon source
[Ref.: #30326]	cellobiose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30326]	dextrin ChEBI	+	carbon source
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #30326]	formate ChEBI	+	carbon source
[Ref.: #30326]	fructose ChEBI	+	carbon source
[Ref.: #30326]	galactose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30326]	glucose ChEBI	+	carbon source
[Ref.: #30326]	glutamate ChEBI	+	carbon source
[Ref.: #30326]	glycerol ChEBI	+	carbon source
[Ref.: #30326]	histidine ChEBI	+	carbon source
[Ref.: #30326]	L-alaninamide ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #30326]	lactose ChEBI	+	carbon source
[Ref.: #30326]	leucine ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #30326]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30326]	mannose ChEBI	+	carbon source
[Ref.: #30326]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30326]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #30326]	phenylalanine ChEBI	+	carbon source
[Ref.: #30326]	proline ChEBI	+	carbon source
[Ref.: #30326]	serine ChEBI	+	carbon source
[Ref.: #30326]	sucrose ChEBI	+	carbon source
[Ref.: #30326]	threonine ChEBI	+	carbon source
[Ref.: #30326]	trehalose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #30326]	tween 40 ChEBI	+	carbon source
[Ref.: #30326]	tween 80 ChEBI	+	carbon source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #30326]	acid phosphatase	+	3.1.3.2
[Ref.: #30326]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #30326]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #19150]	25955	-	-	-	-	-	+	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19150]	Sample type/isolated from	water of oil port
[Ref.: #19150]	Geographic location (country and/or sea, region)	Xiamen, Botan Oil Port
[Ref.: #19150]	Country	China
[Ref.: #19150]	Country ISO 3 Code	CHN
[Ref.: #19150]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Water sample from Botan Oil Port in Xiamen
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Environmental	#Aquatic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19150]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19150]	Sphingomonas polyaromaticivorans strain B2-7 16S ribosomal RNA gene, partial sequence	EF467848	1450	GenBank ENA	433606 tax ID

[Ref.: #19150]	GC-content	61.8 mol%
[Ref.: #67770]	GC-content	61.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #19150]

Culture collection no.

DSM 27062, JCM 16711, KCCM 42951

[Ref.: #87501]

SI-ID 406281

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas morindae sp. nov., isolated from Noni (Morinda citrifolia L.) branch.	Liu Y, Yao S, Lee YJ, Cao Y, Zhai L, Zhang X, Su J, Ge Y, Kim SG, Cheng C	Int J Syst Evol Microbiol	10.1099/ijs.0.000340	2015	*
Phylogeny	Sphingomonas polyaromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium from an oil port water sample.	Luo YR, Tian Y, Huang X, Kwon K, Yang SH, Seo HS, Kim SJ, Zheng TL	Int J Syst Evol Microbiol	10.1099/ijs.0.033530-0	2011	*
Phylogeny	Sphingomonas chungangi sp. nov., a bacterium isolated from garden soil sample.	Akter S, Huq MA	Int J Syst Evol Microbiol	10.1099/ijsem.0.004267	2020	*
Phylogeny	Sphingomonas difficilis sp. nov., a difficultly cultivable bacterium that grows on solid but not in liquid medium, isolated from an abandoned lead-zinc mine.	Feng GD, Xiong X, Zhu HH, Li HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.002461	2017	*
Phylogeny	Sphingomonas oligoaromativorans sp. nov., an oligotrophic bacterium isolated from a forest soil.	Han SI, Lee JC, Ohta H, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.052894-0	2014	*

References

#19150

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27062

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30326

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26667 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#87501

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406281.1 )

#26667

IJSEM 1223 2012 ( DOI 10.1099/ijs.0.033530-0 , PubMed 21742816 )

* These data were automatically processed and therefore are not curated

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